View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2203_high_1 (Length: 422)
Name: NF2203_high_1
Description: NF2203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2203_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Complemental strand, 16555199 - 16554808
Alignment:
| Q |
21 |
tgccgaacttctgggatcggaatatggaaaaatgcaagtgccggtggtgtaattggggaagtaacgtgatcagtagaatgaagaggatcttgctcttgtg |
120 |
Q |
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| T |
16555199 |
tgccgaacttctgggatcggaatatggaaaaatgcaagtgccggtggtgtaattggggaagtaacgtgatcagtagaatgaagaggatcttgctcttgtg |
16555100 |
T |
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| Q |
121 |
cctgtcagtgtgtcacctgcaagatgttaatgggatgtggaaattggaaaacctcacttaagggaaaagaaaggtcacttcttacgaataacagaagaag |
220 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16555099 |
cctgtcagtgtgtgacctgcaagatgttaatgggatgtggaaattggaaaacctcacttaagggaaaagaaaggtcacttcttacgagtaacagaagaag |
16555000 |
T |
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| Q |
221 |
tatgtaattgcattatagaaataaataaattctgttaacattaagctcatttcattttaccttttttgaattaacgttttaactactctaaggaggtagt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16554999 |
tatgtaattgcattatagaaataaataaattctgttaacattaagctcatttcattttaccttttttgaattaacgttttaactactctaaggaggtagt |
16554900 |
T |
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| Q |
321 |
taacgagggtgaaagccaaaaagaaaaggaaaatattccacttatggcaaccattactatatatcgcacctactatattcatttcttctgtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16554899 |
taacgagggtgaaagccaaaaagaaaaggaaaatattccacttatgacaaccattactatatatcgcacctactatattcatttcttctgtg |
16554808 |
T |
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