View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2203_high_6 (Length: 238)

Name: NF2203_high_6
Description: NF2203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2203_high_6
NF2203_high_6
[»] chr1 (1 HSPs)
chr1 (1-231)||(14869926-14870156)
[»] chr8 (1 HSPs)
chr8 (1-236)||(16908503-16908738)
[»] chr5 (2 HSPs)
chr5 (1-230)||(5994750-5994979)
chr5 (1-101)||(17572361-17572461)
[»] chr4 (1 HSPs)
chr4 (19-98)||(44904029-44904108)
[»] chr7 (4 HSPs)
chr7 (19-98)||(26208187-26208266)
chr7 (19-161)||(26204598-26204740)
chr7 (19-161)||(26224235-26224377)
chr7 (187-224)||(14710144-14710181)
[»] chr6 (1 HSPs)
chr6 (37-224)||(12613646-12613833)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14870156 - 14869926
Alignment:
Q  1 ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14870156 ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 14870057  T
Q  101 ttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14870056 ttgccaatgacaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttg 14869957  T
Q  201 tggtgcccaaccccatatcaaatagcctttg 231  Q
    |||||||||||||||||||||||||||||||    
T  14869956 tggtgcccaaccccatatcaaatagcctttg 14869926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 16908503 - 16908738
Alignment:
Q  1 ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 100  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908503 ttccaatttctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 16908602  T
Q  101 ttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttg 200  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| |||||||||||||||| || ||    
T  16908603 tagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctg 16908702  T
Q  201 tggtgcccaaccccatatcaaatagcctttgcttct 236  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16908703 tggtgcccaaccccatatcaaatagcctttgtttct 16908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5994750 - 5994979
Alignment:
Q  1 ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 100  Q
    ||||| || |||||||| || ||||| || |  |||||||| |||||||||||||| |  | | ||||||||||||| ||||||||||| || ||||| |    
T  5994750 ttccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatg 5994849  T
Q  101 ttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttg 200  Q
    |  |   ||| || ||  |||| |||||||| | || ||||||||| ||||| ||| |||| |   |||||| ||||  || ||| |||||||  || ||    
T  5994850 tcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagtatcaaaagctg 5994949  T
Q  201 tggtgcccaaccccatatcaaatagccttt 230  Q
    ||||||||| ||||| ||||||||||||||    
T  5994950 tggtgcccatccccaaatcaaatagccttt 5994979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 17572361 - 17572461
Alignment:
Q  1 ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag 100  Q
    ||||| ||||||||||| || || ||||| |  || |||||  ||||||||||||| | |||  ||||||| ||||| |||||||||||||| |||||||    
T  17572361 ttccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaacaaaggccaag 17572460  T
Q  101 t 101  Q
    |    
T  17572461 t 17572461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 44904108 - 44904029
Alignment:
Q  19 tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca 98  Q
    |||||||||||||  || || |||||||| |||||||| | ||| ||||||||| |||| ||||||||||||| ||||||    
T  44904108 tttgctccaactgggacccctatcttcaaaacatcaacaagcaacctctcattgtaaaattgttcagcaaacattggcca 44904029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 26208266 - 26208187
Alignment:
Q  19 tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca 98  Q
    |||| ||||||||  || ||||||||||| |||||||| | |||| |||||||| |||| || |||||||||| ||||||    
T  26208266 tttgatccaactgaaactccaatcttcaaaacatcaacaagcaatttctcattgtaaaattgctcagcaaacattggcca 26208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 26204740 - 26204598
Alignment:
Q  19 tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg 118  Q
    |||| |||||| || || ||||||||||| |||||||| | ||   |||||||| |||| ||||||||||| | |||||| |||  || ||||||||| |    
T  26204740 tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag 26204641  T
Q  119 catttacactttccataatagtgttccagccacagtgagtcac 161  Q
     ||| |  ||||| | ||| | |||||| ||||||||||||||    
T  26204640 aattcaagctttcaagaattgagttccaaccacagtgagtcac 26204598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 26224377 - 26224235
Alignment:
Q  19 tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg 118  Q
    |||| |||||| || || ||||||||||| |||||||| | ||   |||||||| |||| ||||||||||| | |||||| |||  || ||||||||| |    
T  26224377 tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag 26224278  T
Q  119 catttacactttccataatagtgttccagccacagtgagtcac 161  Q
     ||| |  ||||| | ||| | |||||| ||||||||||||||    
T  26224277 aattcaagctttcaagaattgagttccaaccacagtgagtcac 26224235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 14710144 - 14710181
Alignment:
Q  187 agtatcagcagttgtggtgcccaaccccatatcaaata 224  Q
    ||||||| || |||||||||||||||||||||||||||    
T  14710144 agtatcaacatttgtggtgcccaaccccatatcaaata 14710181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 12613833 - 12613646
Alignment:
Q  37 ccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctgcatttacactttccataa 136  Q
    ||||| || ||||| ||||||| |||| ||||||  ||||| ||||||||||| || ||||||||  |||  ||||| ||  |||| | |||||| |  |    
T  12613833 ccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataaaggccaagtcaccataggcaacccaacattcaaactttcaacta 12613734  T
Q  137 tagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaata 224  Q
      |||||||| ||||| |||||||| | | ||||||  ||    | ||| ||||||| || |||||||||||||||||||||||||||    
T  12613733 ctgtgttccaaccacaatgagtcacaattcctccaatagctttgttctcaagtatcaacaattgtggtgcccaaccccatatcaaata 12613646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University