View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2203_low_1 (Length: 480)
Name: NF2203_low_1
Description: NF2203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2203_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 16909623 - 16909158
Alignment:
| Q |
1 |
aatgcagccatttttcaaacctccatcgaccgcgattcaagtcgcagtcggtccattagaactcacattatcaagtttccacaagtacctggtttgccac |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16909623 |
aatgcagccatttttcaaacctccatcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccac |
16909524 |
T |
|
| Q |
101 |
aaggaatggaaagtttcaatgctgacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaattatttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16909523 |
aaggaatggaaagtttcaatgctgacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcg |
16909424 |
T |
|
| Q |
201 |
tgacatgaaacccgatttcatagtcactgacatgttttctccatggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtgga |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16909423 |
tgacatgaaacctgatttcatagtcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtgga |
16909324 |
T |
|
| Q |
301 |
agttactttgctcattctgcaatgaactctattgaacaatttgaacctcatgtgaaagttaaatcgaatagcgaaagttttctgcttcctgggttgcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16909323 |
agttactttgctcattctgcaatgaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctc |
16909224 |
T |
|
| Q |
401 |
acaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatt |
466 |
Q |
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| T |
16909223 |
acaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatt |
16909158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 14869045 - 14869510
Alignment:
| Q |
1 |
aatgcagccatttttcaaacctccatcgaccgcgattcaagtcgcagtcggtccattagaactcacattatcaagtttccacaagtacctggtttgccac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||| || ||| |||||||||||||||||||||| ||| |
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| T |
14869045 |
aatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcac |
14869144 |
T |
|
| Q |
101 |
aaggaatggaaagtttcaatgctgacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaattatttcg |
200 |
Q |
| |
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|||||||||||| ||||| || ||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| |||| ||| || |
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| T |
14869145 |
gaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccg |
14869244 |
T |
|
| Q |
201 |
tgacatgaaacccgatttcatagtcactgacatgttttctccatggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtgga |
300 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
14869245 |
tgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgggaattccaaggttaatttgtattagtgga |
14869344 |
T |
|
| Q |
301 |
agttactttgctcattctgcaatgaactctattgaacaatttgaacctcatgtgaaagttaaatcgaatagcgaaagttttctgcttcctgggttgcctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||| ||||||||| |||||||| |||||||||||||||| |
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| T |
14869345 |
agttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctc |
14869444 |
T |
|
| Q |
401 |
acaacgtggaaatgacgcgtttgcaacttccggattggcttagagcaccaaatggttatacttatt |
466 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||||| |
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|
| T |
14869445 |
acaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatt |
14869510 |
T |
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