View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2203_low_3 (Length: 297)
Name: NF2203_low_3
Description: NF2203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2203_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 13023048 - 13023323
Alignment:
| Q |
16 |
cagttgacagttatagaagagtcgttgtctaatctattaatctgattatgattttactttgtttctaaagctacctaatgtacctttctgtaaacatttt |
115 |
Q |
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| T |
13023048 |
cagttggcagttatagaagagtcgttgtctaatctattaatctgattatgattttactttgtttctaaagctgcctaatgtacctttctgtaaacatttt |
13023147 |
T |
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| Q |
116 |
acatgatgacttattttattgaacgaatcatttattaaggcataggatactgcatattatttggttaagatttcctttattatcctcgcaatctctctgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13023148 |
acatgatgacttattttattgaacgaatcatttattaaggcataggatactgcatattatttggttaagatttcctttattatccttgcaatctctctgt |
13023247 |
T |
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| Q |
216 |
ttagttgagtgcattagcaggattcaaacaaagaaagaaaacttttcttgtaattaacattacatgccattttctt |
291 |
Q |
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| T |
13023248 |
ttagttgagtgcattagcaggattcaaacaaagaaagaaaacttttcttgtaattaacattacatgtcattttctt |
13023323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 35720946 - 35720831
Alignment:
| Q |
173 |
tatttggttaagatttcctttattatcctcgcaatctctctgtttagttgagtgcattagcaggattcaaacaaagaaagaaaacttttcttgtaattaa |
272 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
35720946 |
tatttggttaaaatttcctttattatccttgcaatctctctgtttagttgagtgcattagcaggatacaaacaaagaaaggcagtttttcttgtaattaa |
35720847 |
T |
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| Q |
273 |
cattacatgccatttt |
288 |
Q |
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| T |
35720846 |
cattacatgtcatttt |
35720831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 35721149 - 35720992
Alignment:
| Q |
16 |
cagttgacagttatagaagagtcgttgtctaat-----ctattaatctgattatgattttactttgtttctaaagctacctaatgtacctttctgtaaa- |
109 |
Q |
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|||||| ||||||||||||||| | |||||||| |||||||||||||| ||||||| ||||| |||||||||| |||||||| | ||||| || |
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| T |
35721149 |
cagttggcagttatagaagagttgctgtctaatgaaatctattaatctgattttgattttgctttgcttctaaagctgcctaatgtgc-tttctttatgg |
35721051 |
T |
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| Q |
110 |
cattttacatgatgacttattttattgaacgaatcatttattaaggcataggatactgc |
168 |
Q |
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| T |
35721050 |
cattttacatgatgacttagtttattgaacgaatcatttattaatgcgtaggatactgc |
35720992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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