View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2204_high_1 (Length: 314)
Name: NF2204_high_1
Description: NF2204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2204_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 13912187 - 13911897
Alignment:
| Q |
19 |
gaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatatagctatagcaactatatacatatt |
118 |
Q |
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| T |
13912187 |
gaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatatagctatagcaactatatacatatt |
13912088 |
T |
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| Q |
119 |
tgtattttttaaaatattaattagaaataactatatattgatagagaaatgaatatttgtactagggtacaaatgtaaatcacgtgctcgtgatactagc |
218 |
Q |
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| T |
13912087 |
tgtattttttaaaatattaattagaaataactatatattgatagagaaatgaatatttgtactagggtacaaatgtaaatcacgtgctcgtgatactagc |
13911988 |
T |
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| Q |
219 |
aagattttgaaaacaaaacactgaatcacctatctaggggaagattcatatcatagaaaatgaaagggacaaaataggacagaataatcta |
309 |
Q |
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| T |
13911987 |
aagattttgaaaacaaaacactgaatcacctatctaggggaagattcatatcatagaaaatgaaagggacaaaataggacagaataatcta |
13911897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 14320560 - 14320652
Alignment:
| Q |
19 |
gaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatatagctatagcaactatatacatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
14320560 |
gaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaatggtatt------aatataaatagctatagcaactatatacatat |
14320652 |
T |
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