View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2204_low_3 (Length: 250)
Name: NF2204_low_3
Description: NF2204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2204_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 52344841 - 52345051
Alignment:
| Q |
1 |
caaagaatggaataaaattgatttgactattgtaatatgggtaatatatggatcgaggatat-------atgtgaagacttgcaaagtgcaattgcaaat |
93 |
Q |
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| T |
52344841 |
caaagaatggaataaaattgatttgactattgcaatatgggtaatatatggatcgaggatatatcatatatgtgaagacttgcaaagtgcaattgcaaat |
52344940 |
T |
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| Q |
94 |
gttatagctgtatatcttatcaaataattttttgacttcatcaaattttttacacatattttgattgcaaaacactgtacttaacctacaaggccggatc |
193 |
Q |
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| T |
52344941 |
gttatagctgtatatcttatcaaataattttttgacttcatcaaattttttacacatattttgattgcaaaacactgtacttaacctacaaggccggatc |
52345040 |
T |
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| Q |
194 |
cagccaactga |
204 |
Q |
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||||||||||| |
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| T |
52345041 |
cagccaactga |
52345051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 52345083 - 52345123
Alignment:
| Q |
205 |
tacaatgcttgaatttctcatctttattggtctctgctcct |
245 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| |
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| T |
52345083 |
tacaatgcttgaatttctcatctttattggtttctgatcct |
52345123 |
T |
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