View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_high_18 (Length: 252)
Name: NF2205_high_18
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6068932 - 6069165
Alignment:
| Q |
1 |
tgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttcaacacctacaagtcgt |
100 |
Q |
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| T |
6068932 |
tgattctaattcaactgccttcttcaactcttctttccttggtgaatccaattccaattccagtaaaacactctccaagtcttcgacacctacaagtcgt |
6069031 |
T |
|
| Q |
101 |
accccgcactctttaataccaattgaaccatcaacttcccccatatcgtttgtaacacagaactcaaaacaaatctcaggtttatcaaatttgagaatgc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6069032 |
accccgcactctttaataccaattgaaccgtcaacttcccccatatcgtttgtaacacagaactcaaaacaaatctcaggtttatcaaatttgagaatgc |
6069131 |
T |
|
| Q |
201 |
tgtcacaatggaatggatcataccacacataaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6069132 |
tgtcacaatggaatggatcataccacacataaac |
6069165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6193321 - 6193551
Alignment:
| Q |
1 |
tgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttcaacacctacaagtcgt |
100 |
Q |
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|||||||||||| || ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||| ||| |||||| |
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| T |
6193321 |
tgattctaattccaccgccttcttcaactcttctttcttttgtgaatccaattcc------ggcaaaacactctccaattcttgaacacttactagtcgt |
6193414 |
T |
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| Q |
101 |
accccgcactctttaataccaattgaaccatcaacttccc--cca-tatcgtttgtaacacagaactcaaaacaaatctcaggtttatcaaatttgagaa |
197 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||| |||| || ||||||||||| |
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| T |
6193415 |
accccacactctttaataccaactgaaccatcaacttcccggccagtatcgtttgtaacatagaactcgaaacaaatctcgggttgataaaatttgagaa |
6193514 |
T |
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| Q |
198 |
tgctgtcacaatggaatggatcataccacacataaac |
234 |
Q |
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| T |
6193515 |
tactgtcacaatggaatggatcataccacacataaac |
6193551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37453659 - 37453425
Alignment:
| Q |
1 |
tgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttcaacacctacaagtcgt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||| |||| |||||||||||||||||||| |||||| ||||||||||| |||||| ||| ||||| |
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| T |
37453659 |
tgattctaattccactgccttcttcaaatcttttttcttttgcgaatccaattccaattccggcaaaacagtctccaattctgcaacacttacttgtcgt |
37453560 |
T |
|
| Q |
101 |
accccgcactctttaataccaattgaaccatcaacttcccc---catatcgtttgtaacacagaactcaaaacaaatctcaggtttatcaaatttgagaa |
197 |
Q |
| |
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||||| |||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
37453559 |
accccacactctttaatatgaattgaactatcaacttccccagtagtatcgtttgtaacatagaactcaaaacaaattttaggttgataaaatttgagaa |
37453460 |
T |
|
| Q |
198 |
tgctgtcacaatggaatggatcataccacacataa |
232 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37453459 |
tgctgtcacaatggaatggatcataccacacataa |
37453425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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