View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2205_high_26 (Length: 230)

Name: NF2205_high_26
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2205_high_26
NF2205_high_26
[»] chr5 (1 HSPs)
chr5 (1-148)||(13399100-13399247)
[»] chr4 (15 HSPs)
chr4 (1-148)||(4003259-4003406)
chr4 (1-148)||(4011738-4011885)
chr4 (1-148)||(4026495-4026642)
chr4 (1-145)||(3953001-3953143)
chr4 (1-148)||(3915957-3916104)
chr4 (1-148)||(3821523-3821670)
chr4 (1-148)||(4220761-4220908)
chr4 (1-148)||(3811950-3812097)
chr4 (8-148)||(3926958-3927098)
chr4 (3-139)||(3988157-3988293)
chr4 (1-116)||(3825810-3825925)
chr4 (1-119)||(3962393-3962511)
chr4 (2-148)||(4019535-4019681)
chr4 (2-59)||(4318247-4318304)
chr4 (1-89)||(3792684-3792772)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 13399247 - 13399100
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| ||| ||||||    
T  13399247 acttaagaggggaaatgacatatcacattcactttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgt 13399148  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13399147 tggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatat 13399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4003406 - 4003259
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||| |||| |    
T  4003406 acttaagaggggagatgatatatcacatgcacttgtagaagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacat 4003307  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4003306 tggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatat 4003259  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4011885 - 4011738
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||| ||| ||||||||||| ||||||||| ||  |||| |    
T  4011885 acttaagaggggagatgacatgtcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcataaaactatgcttgttcacat 4011786  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4011785 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 4011738  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4026642 - 4026495
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| ||    
T  4026642 acttaagaggggagatgacatatcgaattcacttgtagaagcaatagaaggatcattcatttcattgatcatattctcagaaaactatgcttcttcaagt 4026543  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  4026542 tggtgtttagaagaacttttgaaaataattgattgcaaagagaaatat 4026495  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 3953001 - 3953143
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    |||||||||||||||||||||||||  |||| || ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| ||||||    
T  3953001 acttaagaggggagatgacatatca--ttcaatttttgaagcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgt 3953098  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaa 145  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  3953099 tggtgtttagaagaacttgtgaaaataattgagtgcagagagaaa 3953143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3915957 - 3916104
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||  |||| |    
T  3915957 acttaagaggggagatgacatatcagattcacttggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaactatgcttgttcacat 3916056  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||||    
T  3916057 tggtgtttaaaagaacttgtgaaaatagttgagtgtaaagagaaatat 3916104  T

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Target: chr4; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3821670 - 3821523
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||| ||||||||||||||||||||| ||| |||| |    
T  3821670 acttacgaggggagatgacatatcacattcactttttgaagcaattgaaggatctcccatttcattggtcatattctcaaaaaactatgcttcttcacat 3821571  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||| || |||| ||||||||| ||||||||||||||||||    
T  3821570 tggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatat 3821523  T

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Target: chr4; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4220908 - 4220761
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||  ||||||||| ||| |||| |    
T  4220908 acttaagaaaggagatgacatatcacattcacttggtgaagcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacat 4220809  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    |||||||||||||||||||  |||||||||||||||| ||||||||||    
T  4220808 tggtgtttagaagaacttgtaaaaataattgagtgcagagagaaatat 4220761  T

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Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3812097 - 3811950
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||   |||||| ||| ||||||||||| ||||||||| ||| |||| |    
T  3812097 acttaagaggggagatgacatatcacattcacttgtagaagcaatggaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacat 3811998  T
Q  101 tggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  3811997 tggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatat 3811950  T

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Target: chr4; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 3926958 - 3927098
Alignment:
Q  8 aggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgttggtgtt 107  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||||| |||||  ||||||||||| ||| |||| |||| ||  |||| ||||||||    
T  3926958 aggggagatgacatatcagattcacttgttgaagcaatcaaaggatcatccattttgttgatcatattttcagaaaaatatgcttgttcacattggtgtt 3927057  T
Q  108 tagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    |||||||||||| ||||||| ||||||| ||||||||||||    
T  3927058 tagaagaacttgtgaaaatagttgagtgtaaagagaaatat 3927098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 3988293 - 3988157
Alignment:
Q  3 ttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgttg 102  Q
    |||||||||||||||| ||   ||||||||||||||||||||||||||| || || ||||| ||| |||||||||||||||| |||  ||| |||| |||    
T  3988293 ttaagaggggagatgaaatcaaacattcacttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattg 3988194  T
Q  103 gtgtttagaagaacttgcgaaaataattgagtgcaaa 139  Q
    ||||||||| ||||||| ||||||||| |||||||||    
T  3988193 gtgtttagatgaacttgtgaaaataatcgagtgcaaa 3988157  T

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Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3825925 - 3825810
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    |||||||||||||||||| ||| |||| ||||||||   || || |||||||||||| ||||| ||||||||||||||| || |||||| ||| ||| ||    
T  3825925 acttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatcatattctcacaagactatgcttcttcatgt 3825826  T
Q  101 tggtgtttagaagaac 116  Q
    ||||||||||||||||    
T  3825825 tggtgtttagaagaac 3825810  T

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Target: chr4; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3962393 - 3962511
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgt 100  Q
    |||||||||||||||||| ||| |||| ||||||||   ||||||||||||||| || ||||| ||||||||||| ||| |  |||||| ||| ||| ||    
T  3962393 acttaagaggggagatgaaataccacaatcacttgtcagagcaattgaaggatcgttaatttccttgatcatattttcacacgactatgcttcttcatgt 3962492  T
Q  101 tggtgtttagaagaacttg 119  Q
    |||||||||||||||||||    
T  3962493 tggtgtttagaagaacttg 3962511  T

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Target: chr4; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 4019681 - 4019535
Alignment:
Q  2 cttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatggttcctcacgtt 101  Q
    ||||||||||||||||| |||  ||| ||||||||   || ||||||||||||||| ||||| ||||||||||||||| || |||||| ||| ||||| |    
T  4019681 cttaagaggggagatgaaatactacaatcacttgtcagaggaattgaaggatcattaatttccttgatcatattctcacaagactatgcttcttcacgct 4019582  T
Q  102 ggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatat 148  Q
    ||||||| ||||||||||  | |||| || | |||| ||||||||||    
T  4019581 ggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatat 4019535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 4318247 - 4318304
Alignment:
Q  2 cttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattca 59  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||    
T  4318247 cttaagaggggggatgaaatatcacattcatttgttgaagcaattaaaggatcattca 4318304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3792772 - 3792684
Alignment:
Q  1 acttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatcattcatttctttgatcatattctcaaaaaactatg 89  Q
    |||||||||||||||||| ||| |||| ||||||||   || || |||||||||||| ||||| ||||||||||||||| || ||||||    
T  3792772 acttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatcatattctcacaagactatg 3792684  T

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