View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_high_28 (Length: 229)
Name: NF2205_high_28
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 29534940 - 29534748
Alignment:
| Q |
16 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29534940 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattaatgaaaacatagttatgcagtag |
29534841 |
T |
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| Q |
116 |
tgttgcaagagtgcaggttctgtcatggagtgctcttgctgatgtag-nnnnnnnnncttccccagttcagcggtggtgtttgtaggccggct |
207 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29534840 |
tgttgcaagagtgcaggttctgtcatggagtggtcttgctgatgtagttttttttttcttccccagttcagcggtggtgtttgtaggccggct |
29534748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 54419845 - 54420037
Alignment:
| Q |
16 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54419845 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagttatgcagtag |
54419944 |
T |
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| Q |
116 |
tgttgcaagagtgcaggttctgtcatggagtgctcttgctgatgtag-nnnnnnnnncttccccagttcagcggtggtgtttgtaggccggct |
207 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
54419945 |
tgttgcaagagtgcaggttctgtcatggagtggtcttgctgatgtagttttttttttcttccccggttcagcggtggtgtttgtaggccggct |
54420037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 51853468 - 51853322
Alignment:
| Q |
16 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51853468 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagttatgcagtag |
51853369 |
T |
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| Q |
116 |
tgttgcaagagtgcaggttctgtcatggagtgctcttgctgatgtag |
162 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51853368 |
tgttgcaagagtgcaggttctgtcatggagtggtcttgctgatgtag |
51853322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 2840776 - 2840896
Alignment:
| Q |
42 |
acaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtagtgttgcaagagtgcaggttctgtcat |
141 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2840776 |
acaaagtctttcctattaggtcctatgagcataacaaggagaacgacattagtgaaaacacagttatgcagtagtgttgcaagagtgcaggttctgtcat |
2840875 |
T |
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| Q |
142 |
ggagtgctcttgctgatgtag |
162 |
Q |
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|||||| |||||||||||||| |
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| T |
2840876 |
ggagtggtcttgctgatgtag |
2840896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 31984397 - 31984458
Alignment:
| Q |
32 |
atggatgcaaacaaagtctttcctattaggtcctatgagc--atgacaaagagaacaacatt |
91 |
Q |
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||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |||||| |
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| T |
31984397 |
atggatgcaaacaaagtctttgctattagaacctttgagcatatgacaaagagaataacatt |
31984458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 6981470 - 6981603
Alignment:
| Q |
16 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaagagaacaacattagtgaaaacatagttatgcagtag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6981470 |
cagagacactacgggcatggatgcaaacaaagtctttcctattaggtcctatgagcatgacaaggagaacaacattagtgaaaacatagt---------- |
6981559 |
T |
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| Q |
116 |
tgttgcaagagtgcaggttctgtcatggagtgctcttgctgatgta |
161 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6981560 |
--ttgcaagagtgcaggttctgtcatggagtggtcttgctgatgta |
6981603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 22291121 - 22291032
Alignment:
| Q |
33 |
tggatgcaaacaaagtctttcctattaggtcctatgagcatgaca---aagagaacaacattagtgaaaacatagttatgcagtagtgtt |
119 |
Q |
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|||||| ||||||| ||||| |||||||| |||| ||||||| || | ||||||||||||||||||| || |||| |||| ||||||| |
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| T |
22291121 |
tggatgtaaacaaattctttgctattaggacctacgagcatggcagtgaggagaacaacattagtgaaatcaaagttttgcaatagtgtt |
22291032 |
T |
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