View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_high_5 (Length: 387)
Name: NF2205_high_5
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 43893469 - 43893836
Alignment:
| Q |
20 |
ccaaatcctccggctacaaactctctccccacattgttcatcacaaaattttctgtccaaaactccattctcttttttctgcaataacatcaaagagaaa |
119 |
Q |
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| T |
43893469 |
ccaaatcctcctgctacaaactctctccccacattgttcatcacaaaattttctgtccaaaactccattctcttttttctgtaatgacatcaaagagaaa |
43893568 |
T |
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| Q |
120 |
acgaaccataagttataggcatcatatatataaaagtccaaaaattgaaatgtgnnnnnnnaggctttatttcttaatacctggaaaaaagacaaaaccg |
219 |
Q |
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| T |
43893569 |
acgaaccataagttataggcatcatatatataaaagtccaaaaattgaaatgtgtttttttaggctttatttcttaatacctggaaaaaagacaaaaccg |
43893668 |
T |
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| Q |
220 |
aaacgtaatacacaagtggagtgtgtgtgtttggtgtgaagggagagaatgagtttttgttgtgatgaatgggttagcttcactacaatttattaaggaa |
319 |
Q |
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| T |
43893669 |
aaacgtaatacacaagtggagtgtgtgtgtttggtgtgaagggagagaatgagtttttgttgtgatgaatgggttagcttcactacaatttattaaggaa |
43893768 |
T |
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| Q |
320 |
ggttgtgtgacataagctcttggagtacatagtaaattctttcataaaataaaacaaaatatcttgcc |
387 |
Q |
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| T |
43893769 |
ggttgtgtgacataagctcttggagtacatagtaaattctttcataaaataaaacaaaatatcttgcc |
43893836 |
T |
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