View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_high_9 (Length: 310)
Name: NF2205_high_9
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 42870027 - 42869726
Alignment:
| Q |
1 |
tctattttctaaatctgatcatacatcgatttataaccgttaaaaaaatattttttactagctcaattatttttatgaacnnnnnnnnnnattattatga |
100 |
Q |
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| T |
42870027 |
tctattttctaaatctgatcatacatcgatttagaaccgttaaaaaaatatttttgactagctcaattatttttatgaacttttttt----ttattatga |
42869932 |
T |
|
| Q |
101 |
atttttacttgctcatattgtataaatagaacgagtaactaataatgtcttcaattnnnnnnnt--------cattagaaaaaagcagaggaaaataatg |
192 |
Q |
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| T |
42869931 |
attttaacttgctcatattgtataaatagaacgagtaactaataatgtcttcaattaaaaaattaacaaaatcattagaaaaa-gcagaggaaaataatg |
42869833 |
T |
|
| Q |
193 |
attgattaccttgggaaattagaattgaggatttccttctgtccgtactttctccaggaatgagtgtcaccaattgttttagagactatgatccttgtct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42869832 |
attgattaccttgggaaattagaattgaggatttccttctgtccgtactttctccaggaatgagtgtcaccaattgttttagagactatggtccttgtct |
42869733 |
T |
|
| Q |
293 |
catctgt |
299 |
Q |
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||||||| |
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| T |
42869732 |
catctgt |
42869726 |
T |
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