View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2205_low_1 (Length: 628)

Name: NF2205_low_1
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2205_low_1
NF2205_low_1
[»] chr3 (2 HSPs)
chr3 (434-614)||(14861071-14861251)
chr3 (574-614)||(19614559-19614599)
[»] scaffold0093 (1 HSPs)
scaffold0093 (435-614)||(51966-52145)
[»] chr6 (3 HSPs)
chr6 (451-614)||(12463488-12463651)
chr6 (434-530)||(23299780-23299876)
chr6 (434-511)||(23224527-23224605)
[»] chr5 (3 HSPs)
chr5 (450-612)||(13457119-13457281)
chr5 (438-614)||(17364317-17364483)
chr5 (547-614)||(26868011-26868078)
[»] chr7 (5 HSPs)
chr7 (451-614)||(16094879-16095039)
chr7 (486-611)||(20148765-20148889)
chr7 (450-581)||(17161043-17161172)
chr7 (577-614)||(3170212-3170249)
chr7 (450-483)||(20148909-20148942)
[»] scaffold0111 (1 HSPs)
scaffold0111 (450-602)||(30050-30202)
[»] chr8 (7 HSPs)
chr8 (434-590)||(16228324-16228479)
chr8 (441-590)||(25263432-25263582)
chr8 (310-433)||(16598625-16598748)
chr8 (360-433)||(22511661-22511734)
chr8 (360-433)||(22518961-22519034)
chr8 (324-386)||(36889462-36889524)
chr8 (579-614)||(21695242-21695277)
[»] scaffold0417 (1 HSPs)
scaffold0417 (442-614)||(3760-3933)
[»] scaffold0186 (1 HSPs)
scaffold0186 (452-564)||(17771-17883)
[»] chr4 (4 HSPs)
chr4 (435-609)||(9199228-9199402)
chr4 (435-609)||(9252811-9252985)
chr4 (458-522)||(15692418-15692482)
chr4 (460-609)||(9270573-9270721)
[»] chr2 (1 HSPs)
chr2 (456-562)||(21909966-21910071)
[»] scaffold0240 (2 HSPs)
scaffold0240 (353-433)||(2018-2098)
scaffold0240 (360-427)||(15288-15355)
[»] scaffold0330 (1 HSPs)
scaffold0330 (353-433)||(18000-18080)
[»] scaffold0115 (1 HSPs)
scaffold0115 (513-614)||(36736-36837)
[»] scaffold0001 (1 HSPs)
scaffold0001 (556-614)||(155139-155197)
[»] scaffold0672 (1 HSPs)
scaffold0672 (516-614)||(6637-6734)
[»] chr1 (1 HSPs)
chr1 (574-614)||(21402751-21402791)
[»] scaffold0126 (1 HSPs)
scaffold0126 (513-568)||(32860-32916)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 434 - 614
Target Start/End: Original strand, 14861071 - 14861251
Alignment:
Q  434 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttca 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  14861071 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaagggggatagattccttttatcaattaagctataacttca 14861170  T
Q  534 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14861171 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 14861251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 614
Target Start/End: Complemental strand, 19614599 - 19614559
Alignment:
Q  574 gactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  19614599 gactttttgtcatttttgatgatgaatttcgtgctcctaat 19614559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 435 - 614
Target Start/End: Complemental strand, 52145 - 51966
Alignment:
Q  435 ggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcat 534  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||| |||||||||||||||||||| |    
T  52145 ggtttgaaaagctagggggagattgaagcttaagctagtggactcaagacctagaggtaaaggggatagattcatttcatcaattaagctataatttctt 52046  T
Q  535 ctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||| | ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||||    
T  52045 ctttgtgattatgggtcataagtgattattgtgaattatgattttttgtgatttttgatgatgaattccgttctcttaat 51966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 451 - 614
Target Start/End: Original strand, 12463488 - 12463651
Alignment:
Q  451 gggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggt 550  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||| |||||||||| ||||||||||    
T  12463488 gggagattgaagcttaagctagtggattcaagacctagaggtaagggggatagattcatttcatcaattgagctataacttcatcttttcaattatgggt 12463587  T
Q  551 cataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  12463588 cataagcgattattgtgaattatgagtttttgtgatttttaatgatgaatatcgtgctcttaat 12463651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 434 - 530
Target Start/End: Complemental strand, 23299876 - 23299780
Alignment:
Q  434 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatt 530  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||    
T  23299876 gggtttgaagagctagggagagatttaagcgtaagctagtggattcaagacctacaggtaagggggatagattcctttcatcaattaggctataatt 23299780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 511
Target Start/End: Original strand, 23224527 - 23224605
Alignment:
Q  434 gggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttt 511  Q
    ||||||||||||||||| |  | | ||| ||||||||| ||||||||||||||||||| |||| |||||||||| ||||    
T  23224527 gggtttgaagagctaggagctaaagtgaggcttaagcttgtggattcaagacctagaggtaagaggaatagattgcttt 23224605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 450 - 612
Target Start/End: Complemental strand, 13457281 - 13457119
Alignment:
Q  450 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 549  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||  ||||||||| |||| ||||    
T  13457281 ggggagattgaagcttaagctagcggattcaagacctagaggtaagggggatagattcttttcatcaattaagctataacgtcatcttttcaattttggg 13457182  T
Q  550 tcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctctta 612  Q
    || |||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  13457181 tcgtaagtgcttattgtgaattatgactttttgtgattttttatgatgaatttagtgctctta 13457119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 438 - 614
Target Start/End: Complemental strand, 17364483 - 17364317
Alignment:
Q  438 ttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataattt-catct 536  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||      | ||||||| ||| |||  ||| || |||||   |||||||| |||||    
T  17364483 ttgaagagctagggg-agattgaagcctaagctagtggattcaaga------ggtaagggggataaattattttcat-aatta---tataattttcatct 17364395  T
Q  537 ttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  17364394 tttcaattatgggtcataagtgattattgtgaattatgattttttgtgattttttatgatgaatttcgtgctcttaat 17364317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 26868078 - 26868011
Alignment:
Q  547 gggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||||||||  |||||||||||    
T  26868078 gggtcataagtgattattgtgaattatgattttttgtgatttttgatgatgaattctgtgctcttaat 26868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 451 - 614
Target Start/End: Complemental strand, 16095039 - 16094879
Alignment:
Q  451 gggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggt 550  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  16095039 gggagattgaagcttaagctagtggattcaagacctagaggtaagggga-tagattcctttcatcaattaagcaataatttcttcttttcaattatgggt 16094941  T
Q  551 cataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||||||| |||||||  |  ||||||||||||| ||||||||||| |||||||||||    
T  16094940 cataagtgattattatgaattataa--ttttgtgatttttgatgatgaattttgtgctcttaat 16094879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 611
Target Start/End: Complemental strand, 20148889 - 20148765
Alignment:
Q  486 tagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtcataagtgattattgtgaattaagactttttgtga 585  Q
    ||||| |||||||| ||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  20148889 tagaggtaagggga-tagattcctttcatcaattaagatataatttcttctttttgattatgggtcataagtgcttattgtgaattatgactttttgtga 20148791  T
Q  586 tttttaatgatgaatttcgtgctctt 611  Q
    ||||| ||||||||||| ||||||||    
T  20148790 ttttttatgatgaattttgtgctctt 20148765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 581
Target Start/End: Original strand, 17161043 - 17161172
Alignment:
Q  450 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 549  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | || ||||   ||||||||||||| ||||| |||| || || |||    
T  17161043 ggggagattgaagcttaagctagtggattcaagacctagaggtaagggggatata-tcattttcataattaagctataacttcatattttcaa-tacggg 17161140  T
Q  550 tcataagtgattattgtgaattaagacttttt 581  Q
    ||||||||| ||||||||||||| || |||||    
T  17161141 tcataagtgcttattgtgaattatgatttttt 17161172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 614
Target Start/End: Original strand, 3170212 - 3170249
Alignment:
Q  577 tttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  3170212 tttttgtgaattttgatgatgaatttcgtgctcttaat 3170249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 20148942 - 20148909
Alignment:
Q  450 ggggagattgaagcttaagctagtggattcaaga 483  Q
    |||| |||||||||||||||||||||||||||||    
T  20148942 ggggtgattgaagcttaagctagtggattcaaga 20148909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 450 - 602
Target Start/End: Original strand, 30050 - 30202
Alignment:
Q  450 ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatggg 549  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| ||||||||   |||| |||||||||| |||||||||    
T  30050 ggggagattgaagcttaaggtagttgattcaagacctagaggtaagggaaatagattccttttttcaattaaaaaataacttcatcttttcaattatggg 30149  T
Q  550 tcataagtgattattgtgaattaagactttttgtgatttttaatgatgaattt 602  Q
    ||||||||||||||||||||||| || || ||||||||||| |||||||||||    
T  30150 tcataagtgattattgtgaattatgatttgttgtgattttttatgatgaattt 30202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 434 - 590
Target Start/End: Complemental strand, 16228479 - 16228324
Alignment:
Q  434 gggtttgaagagctagggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttca 533  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||  |||||| |||| ||||||||||| |||||||||    
T  16228479 gggtttgaagagctagggggagattgaaacttgagctagtggattcaagacctagagaaatggggggtagattactttcatcaattaagcaataatttca 16228380  T
Q  534 tctttttaattatgggtcataagtgattattgtgaattaagactttttgtgattttt 590  Q
     | |||| ||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  16228379 ac-ttttgattatgggtcatatgtgattattgggaattatgactttttgtgattttt 16228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 441 - 590
Target Start/End: Complemental strand, 25263582 - 25263432
Alignment:
Q  441 aagagctag-ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttt 539  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| ||  |||||| |||  ||| ||| |||||||||||||||||||||||||||    
T  25263582 aagagctagaggggagattgaagtttaagctagtggattcaagacctaaagggaagggggatatgttcttttcatcaattaagctataatttcatctttt 25263483  T
Q  540 taattatgggtcataagtgattattgtgaattaagactttttgtgattttt 590  Q
     | |||||| |||||| |||||||||||||||| |||||||||||||||||    
T  25263482 cagttatggatcataaatgattattgtgaattatgactttttgtgattttt 25263432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 310 - 433
Target Start/End: Complemental strand, 16598748 - 16598625
Alignment:
Q  310 caccttctggtttgacttcatcttcatcaactttagcctttaatgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctg 409  Q
    |||||||||||||| ||| ||||||||||| ||||||||| |||| ||||||||| |||||| |||||||||||||| | |||||||| |||||||| ||    
T  16598748 caccttctggtttgtctttatcttcatcaagtttagccttcaatgttttatgatcattttcaatagatttagctgaattggcctgttcccgtaaaatttg 16598649  T
Q  410 cagcttcttccagtgattcgacat 433  Q
    ||||||||||| ||||||||||||    
T  16598648 cagcttcttcccgtgattcgacat 16598625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 22511661 - 22511734
Alignment:
Q  360 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 433  Q
    |||| ||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  22511661 tgattcttttcaatagatttagcagaattggcctgttctcgtaaaatctgcagcttcttccaatgattcgacat 22511734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 22518961 - 22519034
Alignment:
Q  360 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 433  Q
    |||| ||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  22518961 tgattcttttcaatagatttagcagaattggcctgttctcgtaaaatctgcagcttcttccaatgattcgacat 22519034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 36889462 - 36889524
Alignment:
Q  324 acttcatcttcatcaactttagcctttaatgctttatgatccttttcagtagatttagctgaa 386  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  36889462 acttcttcttcatcaagtttagcctttaatgctttatgacccttttcaatagatttagctgaa 36889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 614
Target Start/End: Complemental strand, 21695277 - 21695242
Alignment:
Q  579 tttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||||| |||||||||||||||||||||||    
T  21695277 tttgtgatttttgatgatgaatttcgtgctcttaat 21695242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 442 - 614
Target Start/End: Complemental strand, 3933 - 3760
Alignment:
Q  442 agagctag-ggggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattcctttta-tcaattaagctataatttcatctttt 539  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||| |||||| ||||| | |||||||||||||||| |||||||||    
T  3933 agagctagaggggagattgaagcttaagctagtggattgaaaacctataggtaagggggatagat-cctttcactcaattaagctataatctcatctttt 3835  T
Q  540 taattatgggtcataagtgattat-tgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
     |||||||||||||||||| || | | | ||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  3834 caattatgggtcataagtgcttttgtattaattatgac-ttttgtgatttttgatgatgaatttcgtgctcttaat 3760  T

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Target: scaffold0186 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 17883 - 17771
Alignment:
Q  452 ggagattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtc 551  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||| ||||  || |||||||    
T  17883 ggagattgaagcttaagttagtggattcaagacctagaggtaagggggatagattcatttcatcaattaagctataatttcatattttccatcatgggtc 17784  T
Q  552 ataagtgattatt 564  Q
    |||| ||||||||    
T  17783 ataaatgattatt 17771  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 435 - 609
Target Start/End: Complemental strand, 9199402 - 9199228
Alignment:
Q  435 ggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttc 532  Q
    |||||||||||||||| |  | |||||||| ||||||||||  |||||||||||||| ||||| | |||| | | |||||| ||||||| |||||| |||    
T  9199402 ggtttgaagagctaggagctaaattgaagcctaagctagtgagttcaagacctagaggtaaggaggatagctcctttttat-aattaagttataatcttc 9199304  T
Q  533 atctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 609  Q
    ||||||| ||||||| |  ||| ||| |||| |||||||| |||||||| ||||||| |||| ||||||||||||||    
T  9199303 atcttttcaattatgaga-ataggtggttatggtgaattatgactttttatgattttaaatgttgaatttcgtgctc 9199228  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 609
Target Start/End: Complemental strand, 9252985 - 9252811
Alignment:
Q  435 ggtttgaagagctaggggg-agattgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttc 532  Q
    |||||||||||||||| |  | |||||||| |||||||||| ||||||||||||||  ||||||| ||| || | ||| || | ||||| |  ||  |||    
T  9252985 ggtttgaagagctaggagctaaattgaagcctaagctagtgaattcaagacctagatgtaagggggatatatccttttcat-agttaagtttcaaccttc 9252887  T
Q  533 atctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 609  Q
    ||||||| ||||||| |  | | ||| |||| |||||||| |||||||||||||||| |||| ||||||||||||||    
T  9252886 atcttttcaattatgaga-acaggtgcttatggtgaattatgactttttgtgattttgaatgttgaatttcgtgctc 9252811  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 15692482 - 15692418
Alignment:
Q  458 tgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaag 522  Q
    ||||||||||||||| ||| |||||| |||||| |||||||||| | ||||||| ||||||||||    
T  15692482 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 15692418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 609
Target Start/End: Complemental strand, 9270721 - 9270573
Alignment:
Q  460 aagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataat-ttcatctttttaattatgggtcataagtg 558  Q
    |||| |||| ||||| ||||||||||||||| |||||||  || || | ||| || ||||||| || ||  |||||||||| ||||||| |  ||| ||     
T  9270721 aagcctaagttagtgaattcaagacctagaggtaaggggggtatatccttttcat-aattaagttacaaccttcatcttttcaattatgaga-ataggta 9270624  T
Q  559 attattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctc 609  Q
     |||| |||||||| |||||||||||||||| |||| ||||||||||||||    
T  9270623 cttatggtgaattatgactttttgtgattttgaatgttgaatttcgtgctc 9270573  T

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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 562
Target Start/End: Original strand, 21909966 - 21910071
Alignment:
Q  456 attgaagcttaagctagtggattcaagacctagagctaaggggaatagattccttttatcaattaagctataatttcatctttttaattatgggtcataa 555  Q
    ||||||| |||||||| | |||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||   |  | ||||||||||||||    
T  21909966 attgaagtttaagctaatagattcaagacctagaggtaagggggatagatttctttcatcaattaagctataatttca-aatagtgattatgggtcataa 21910064  T
Q  556 gtgatta 562  Q
    |||||||    
T  21910065 gtgatta 21910071  T

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Target: scaffold0240 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 2098 - 2018
Alignment:
Q  353 tgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 433  Q
    |||||| |||||||||||| |||||||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||    
T  2098 tgctttctgatccttttcaatagatttagctgaatttgcctattctcgtaaaatatgcagcttctttcagtgatttgacat 2018  T

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Target: scaffold0240; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 15355 - 15288
Alignment:
Q  360 tgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgatt 427  Q
    |||||||||||| |||||||| ||||| |  | |||||| |||||||||||||||||||| |||||||    
T  15355 tgatccttttcaatagatttaactgaattgacatgttcttgtaaaatctgcagcttcttcaagtgatt 15288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 18080 - 18000
Alignment:
Q  353 tgctttatgatccttttcagtagatttagctgaagtcgcctgttctcgtaaaatctgcagcttcttccagtgattcgacat 433  Q
    |||||| |||||||||||| |||||||||||||| | |||| |||||||||||| ||||||||||| | |||||| |||||    
T  18080 tgctttctgatccttttcaatagatttagctgaatttgcctattctcgtaaaatatgcagcttctttctgtgatttgacat 18000  T

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Target: scaffold0115 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 614
Target Start/End: Original strand, 36736 - 36837
Alignment:
Q  513 atcaattaagctataatttcatctttttaattatgggtcataagtgattat-tgtgaattaagactttttgtgatttttaatgatgaatttcgtgctctt 611  Q
    ||||| || |||||||| ||||||||||| || ||||||||||||| || | ||||||||| ||  ||||||||||||| ||| |||||||||||||| |    
T  36736 atcaaatatgctataatctcatctttttacttttgggtcataagtgcttttgtgtgaattacga-attttgtgatttttgatgttgaatttcgtgctcct 36834  T
Q  612 aat 614  Q
    |||    
T  36835 aat 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 614
Target Start/End: Complemental strand, 155197 - 155139
Alignment:
Q  556 gtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    ||||||||| ||||||| ||||||||||||||||| | ||||||||| |||||||||||    
T  155197 gtgattattctgaattatgactttttgtgatttttgaagatgaattttgtgctcttaat 155139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 614
Target Start/End: Original strand, 6637 - 6734
Alignment:
Q  516 aattaagctataatttcatctttttaattatgggtcataagtgattattgtgaattaagactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    ||||||| | ||| |||||||||| |||||| ||  |||| || ||||||||||||| |||||||||||| |||| ||||| |||| ||| ||||||||    
T  6637 aattaagatctaacttcatcttttaaattattgga-ataaatgcttattgtgaattatgactttttgtgaattttgatgataaattccgttctcttaat 6734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 614
Target Start/End: Complemental strand, 21402791 - 21402751
Alignment:
Q  574 gactttttgtgatttttaatgatgaatttcgtgctcttaat 614  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  21402791 gactttttgtgattttgaatgatgaatttcgtgctcataat 21402751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 32860 - 32916
Alignment:
Q  513 atcaattaagctataat-ttcatctttttaattatgggtcataagtgattattgtga 568  Q
    ||||| ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||    
T  32860 atcaaataagctataatcttcatttttctacttatgggtcataagtgatttttgtga 32916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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