View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_10 (Length: 325)
Name: NF2205_low_10
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 13152344 - 13152665
Alignment:
| Q |
9 |
acatcatcacatgcatataattttcatcttatgtnnnnnnntaatgtatataattttcacatcactccctaggcagagatgaagtgtatgatcacgttag |
108 |
Q |
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| T |
13152344 |
acatcatcacatgcatataattttcatcttatgtaaaaaaataatgtatataattttcacatcactccctaggcagagatgaagtgtatgatcacgttag |
13152443 |
T |
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| Q |
109 |
ttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgtgaaatcactatatacagt |
208 |
Q |
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| T |
13152444 |
ttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgtgaaatcactatatacagt |
13152543 |
T |
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| Q |
209 |
tcagtgttggaacatggcaatgagcaaaaccatgttcacaaaatgatgaactttataataaaattattcatctgtccttga-----atagtttgaactca |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13152544 |
tcagtgttggaacatggcaatgagcaaaaccatgttcacaaaatgatgaactttataataaaattattcatctgtccttgaatagtatagtttgaactca |
13152643 |
T |
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| Q |
304 |
gtataatgtgccaaacatagag |
325 |
Q |
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|||||||||||||||||||||| |
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| T |
13152644 |
gtataatgtgccaaacatagag |
13152665 |
T |
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