View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_18 (Length: 282)
Name: NF2205_low_18
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 5681346 - 5681084
Alignment:
| Q |
16 |
ataaaccaagttaacaacatggacaaaacgtaatcctattctggttggatatagaccagttgatggcacatccatcttttatccagtctcttcgatttga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
5681346 |
ataaaccaagttaacaacatggacaaaacgtaatcctattctggttggatatagaccagttgatggcacattcatcttttatccagtctcttccatttca |
5681247 |
T |
|
| Q |
116 |
ttaccggccaccagattctcgaagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatata |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5681246 |
ttaccggccaccagattctcggagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatata |
5681147 |
T |
|
| Q |
216 |
taagaacttgagatgttgttagacattattactttgttgtcattaacataattttaaccaagctgg |
281 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5681146 |
taagaacttgagatgttgttagac---attactttgttgtcattaacataattttaaccaagctgg |
5681084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 5671849 - 5671587
Alignment:
| Q |
16 |
ataaaccaagttaacaacatggacaaaacgtaatcctattctggttggatatagaccagttgatggcacatccatcttttatccagtctcttcgatttga |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
5671849 |
ataaaacaagttaacaacatggacaaaacgtaatcctattctggttggatatagaccagttgatggcacatccatcttttatccagtctcttccatttca |
5671750 |
T |
|
| Q |
116 |
ttaccggccaccagattctcgaagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatata |
215 |
Q |
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| T |
5671749 |
ttaccggccaccagattctcggagggttgagaggagcttgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatata |
5671650 |
T |
|
| Q |
216 |
taagaacttgagatgttgttaga-cattattactttgttgtcattaacataattttaaccaagctgg |
281 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |
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| T |
5671649 |
taagaacttgagatgttgttagagca----tactttgttgtcattaacatcattttaaccaagctgg |
5671587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 5796193 - 5795968
Alignment:
| Q |
55 |
tctggttggatatagaccagttgatggcacatccatcttttatccagtctcttcgatttgattaccggccaccagattctcgaagggttgagaggagcat |
154 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| || | |||||||| ||||||| ||| ||||||||||| | |
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| T |
5796193 |
tctggttggatatagaccagttgatgacacatccatcttttatccagtctctcccgtttcatcatcggccacctgattctcagaggcttgagaggagcct |
5796094 |
T |
|
| Q |
155 |
gagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaa--tatagaacatatataagaacttgagatgttgttaga-cattattactttg |
251 |
Q |
| |
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||||| ||| |||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||| || ||||||| |
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| T |
5796093 |
gagcattgcaaggaaccgacactagagcatgatgagttctgaaagtaatatatataacatatataagtacttgagatgctgttagagca----tactttg |
5795998 |
T |
|
| Q |
252 |
ttgtcattaacataattttaaccaagctgg |
281 |
Q |
| |
|
|| ||||| |||| ||| |||||||||||| |
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| T |
5795997 |
ttttcattgacatcattctaaccaagctgg |
5795968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 5736208 - 5736118
Alignment:
| Q |
99 |
cagtctcttcgatttgattaccggccaccagattctcgaagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatga |
189 |
Q |
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|||||||| | |||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
5736208 |
cagtctctcccatttcattaccggccaccagattctcggagggttgaaaggagcttgagcactgctaggaaccgacacataagcatgatga |
5736118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 5773320 - 5773230
Alignment:
| Q |
99 |
cagtctcttcgatttgattaccggccaccagattctcgaagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatga |
189 |
Q |
| |
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|||||||| | |||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
5773320 |
cagtctctcccatttcattaccggccaccagattctcggagggttgaaaggagcttgagcactgctaggaaccgacacataagcatgatga |
5773230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 5705064 - 5705027
Alignment:
| Q |
185 |
gatgagttctgaaagtaatatagaacatatataagaac |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5705064 |
gatgagttctgaaagtaatatagaacatatataagaac |
5705027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 38651830 - 38651795
Alignment:
| Q |
20 |
accaagttaacaacatggacaaaacgtaatcctatt |
55 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
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|
| T |
38651830 |
accaagttaacaacatggacaaaatgtaatcctatt |
38651795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 45384897 - 45384791
Alignment:
| Q |
132 |
tctcgaagggttgagaggagcatgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatatataagaacttgagatgt |
231 |
Q |
| |
|
||||| ||| |||||| |||| |||||| |||||||| |||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||||||||| |
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|
| T |
45384897 |
tctcggaggcttgagaagagcttgagcattgctaggagtcgacacgagagcatgaggagttctgaaagtaataatgaaaatatagaagaacttgagatgt |
45384798 |
T |
|
| Q |
232 |
tgttaga |
238 |
Q |
| |
|
||||||| |
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|
| T |
45384797 |
tgttaga |
45384791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 41482909 - 41483012
Alignment:
| Q |
154 |
tgagcactgctaggaaccgacacatgagcatgatgagttctgaaagtaatatagaacatatataagaacttgagatgttgttagacattattactttgtt |
253 |
Q |
| |
|
|||||| ||||||||| | |||| || ||||| ||| ||||||||||| | |||| ||||| ||||||||||| |||||||||| || | ||||||||| |
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| T |
41482909 |
tgagcattgctaggaatcaacacgagatcatgaggagatctgaaagtaaaacagaaaatatagaagaacttgaggtgttgttaga-atca-tactttgtt |
41483006 |
T |
|
| Q |
254 |
gtcatt |
259 |
Q |
| |
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|||||| |
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|
| T |
41483007 |
gtcatt |
41483012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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