View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2205_low_2 (Length: 585)
Name: NF2205_low_2
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Complemental strand, 2328898 - 2328344
Alignment:
| Q |
18 |
tttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328898 |
tttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattag |
2328799 |
T |
|
| Q |
118 |
tccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328798 |
tccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggtt |
2328699 |
T |
|
| Q |
218 |
ggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2328698 |
ggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccttgacataccatattgcttcatat |
2328599 |
T |
|
| Q |
318 |
agcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaatnnnnnnnnnnnnnntcaatgcaacaatttctattgtgtaaaaaactta |
417 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2328598 |
agcaatccagcaatgagcaaacatgtcctcttttacgttcaaactatgtaat---aaaaaaaaaaatcaatgcaacaatttctattgtgtaaaaaactta |
2328502 |
T |
|
| Q |
418 |
cattagagagaaataaagcttaaattttctatatatctagatatagatgtgatatataaatacctcactggtcacaatttcatccattagtctacaaata |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328501 |
cattagagagaaataaagcttaaattttctatatatctagatatagatgtgatatataaatacctcactggtcacaatttcatccattagtctacaaata |
2328402 |
T |
|
| Q |
518 |
gtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttctctg |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328401 |
gtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttctctg |
2328344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 51 - 362
Target Start/End: Original strand, 14264683 - 14264994
Alignment:
| Q |
51 |
acataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatcttt |
150 |
Q |
| |
|
||||||| ||| ||| ||||||||||| |||||| || || || |||| || |||| ||||| || |||||| | | || |||||||||| |||| | |
|
|
| T |
14264683 |
acataaacattgatgctcaaattggaattggatccaccaggacgtctttaatgtatgttttcatgagaccttcaacatgagtatagttatctttatctgt |
14264782 |
T |
|
| Q |
151 |
gtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaa |
250 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||| |||||||| |||| | |||||||| |
|
|
| T |
14264783 |
gtaaaacacatccataaaacgcgaaaaattgagagcgcgagttagaaaatccattggaacttcggttggccttagacattctttgtttatatctttccaa |
14264882 |
T |
|
| Q |
251 |
gcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttt |
350 |
Q |
| |
|
|| ||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14264883 |
gcgattgcaactctcttttggcattcttgaatagcagcttccctagtcataccatattgttttatatagcaatccaacaatgagcaaacatgtcctcttt |
14264982 |
T |
|
| Q |
351 |
tacgttcaaact |
362 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
14264983 |
tatgttcaaact |
14264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 25835054 - 25834798
Alignment:
| Q |
96 |
ctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttag |
195 |
Q |
| |
|
|||||| |||| |||||| |||||||||||| ||||||| || |||| |||||||||| |||||||||||||||| || |||||||| || | || |
|
|
| T |
25835054 |
ctttgacatatttcttcataagtccttcagaatgtgtgtaattgtctttatctttgtaattcacatccataaaacgcgaaaaattgagagcacgaataag |
25834955 |
T |
|
| Q |
196 |
aaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccta |
295 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
25834954 |
aaaaggcattggaactttggttggcctaagacattcctcatttatatctttccaagcaattgcaattcccttatggcattcttgaatagcagcttcccta |
25834855 |
T |
|
| Q |
296 |
gacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctctttta |
352 |
Q |
| |
|
|||||| |||| |||||||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
25834854 |
gacatatcatactgcttcatgtagcaatccaacaatgagcaaacatgttctctttta |
25834798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 364
Target Start/End: Original strand, 41349259 - 41349562
Alignment:
| Q |
61 |
taatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactaca |
160 |
Q |
| |
|
||||| |||||| || || ||||||||||| | || ||| || ||||||||||| |||||||| | |||| ||||||||| |||||| ||||| ||| |
|
|
| T |
41349259 |
taatgctcaaataggcacgggatcaacaagtaaagatttaatgaatgacttcatttctccttcaggatgtgtaaagttatctttatctttataaaccaca |
41349358 |
T |
|
| Q |
161 |
tccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaa |
260 |
Q |
| |
|
||||| ||||| | | ||| ||| ||| | ||||| ||||||| ||| | ||||| | |||||||||| ||| | | ||||||||||| | ||| |
|
|
| T |
41349359 |
tccatgaaacgtgataagtttagaatgcgcatcagaaaaggcattgaaacctcggttgacataagacattctttattaatatctttccaagcatctacaa |
41349458 |
T |
|
| Q |
261 |
tttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaa |
360 |
Q |
| |
|
|| |||| | ||||||||| ||| |||| ||||| ||| ||||||| |||||||||| || | |||||| |||||||| ||||||| ||||||| |
|
|
| T |
41349459 |
ttctctttcgaccttcttgaatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaa |
41349558 |
T |
|
| Q |
361 |
ctat |
364 |
Q |
| |
|
|||| |
|
|
| T |
41349559 |
ctat |
41349562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 364
Target Start/End: Complemental strand, 31201728 - 31201499
Alignment:
| Q |
135 |
agttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccga |
234 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||| | || || ||| ||| || ||||| ||||||||||||| ||||| |||| ||||||| |
|
|
| T |
31201728 |
agttatctttatctttataaacgacatccataaaacgtgacagatttagaatgcgtgtaagaaaaggcattggaacttcagttggtctaaaacattcctt |
31201629 |
T |
|
| Q |
235 |
atttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgag |
334 |
Q |
| |
|
||| | | ||||||||||| |||||| ||| | ||||||||| |||||||||||||| | | ||||||| |||||||||| || | |||||| |
|
|
| T |
31201628 |
attcatatctttccaagcatcagcaattctatttcgaccttcttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgag |
31201529 |
T |
|
| Q |
335 |
caaacatgtcctcttttacgttcaaactat |
364 |
Q |
| |
|
||||||| |||||| ||||||||||| |
|
|
| T |
31201528 |
gtaacatgttctctttcttgttcaaactat |
31201499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 67 - 362
Target Start/End: Original strand, 20602823 - 20603118
Alignment:
| Q |
67 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
166 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| ||| |||||||||||| | |||| ||||||||||||| | |||||||| ||||||||| |
|
|
| T |
20602823 |
tcaaattggaacaggatcaaccaacacttctttaataaatgtcttcattagtccgttagaatccgtgtagttatctttgtttttgtaaataacatccata |
20602922 |
T |
|
| Q |
167 |
aaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcct |
266 |
Q |
| |
|
||||||| ||| |||||| | | | | ||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| | |
|
|
| T |
20602923 |
aaacgcgaaagattgagaacacaaatcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctat |
20603022 |
T |
|
| Q |
267 |
ttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaact |
362 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20603023 |
ttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact |
20603118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 67 - 361
Target Start/End: Original strand, 20621812 - 20622106
Alignment:
| Q |
67 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
166 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| | | ||||||||||| | |||| ||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
20621812 |
tcaaattggaacaggatcaaccaacacttctttaatacaagtcttcattagtctgttagaatctgtgtagttatcttcgtttttgtaaacaacatccata |
20621911 |
T |
|
| Q |
167 |
aaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcct |
266 |
Q |
| |
|
||||||| |||||| ||| | | || | ||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| | |
|
|
| T |
20621912 |
aaacgcgaaaggttaagaacacaagtcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctat |
20622011 |
T |
|
| Q |
267 |
ttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaac |
361 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| || ||||||||||||| ||||||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
20622012 |
ttttgcattcttgaatagcagcttctctcgacatatcaaattgcttcatataacaatctaacaatgagcaaacttgccctcttttctgttcaaac |
20622106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 368
Target Start/End: Complemental strand, 17183401 - 17183092
Alignment:
| Q |
59 |
attaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaacta |
158 |
Q |
| |
|
||||||| ||||||||| || ||||| ||||| | |||||| || |||| ||||||| ||||| |||| | |||||||| ||||||| || |||| || |
|
|
| T |
17183401 |
attaatgctcaaattggcaccggatctacaagcaaagctttaatgtatgtcttcatttctcctttagaatgcgtgtagttgtcttcatgcttataaatta |
17183302 |
T |
|
| Q |
159 |
catccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgc |
258 |
Q |
| |
|
||||||||||||||| || |||| | ||| |||||||| || ||||||||||||||||| |||||||||| ||||| | ||||||||||| | | |
|
|
| T |
17183301 |
catccataaaacgcgagagattgacaatgcgagttagaaaaagcgttggaactttggttggcttaagacattcttcatttatatctttccaagcattaac |
17183202 |
T |
|
| Q |
259 |
aatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttca |
358 |
Q |
| |
|
|| | |||| |||||||||||||| |||||| ||||| ||| |||| |||||||||||| || | |||||| ||||||||||||||||| ||||| |
|
|
| T |
17183201 |
aactcttttttggcattcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttca |
17183102 |
T |
|
| Q |
359 |
aactatgtaa |
368 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17183101 |
aactgtgtaa |
17183092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 56 - 365
Target Start/End: Complemental strand, 25794490 - 25794181
Alignment:
| Q |
56 |
aaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaa |
155 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||||| || ||| ||||||| |||||||| | ||| ||||||||| |||||| |||| |
|
|
| T |
25794490 |
aaaattaatgatcaaattaacactggatctacaagcaaagctttaatgaatgtcttcatttctccttcagtgtgagtgaagttatctttatctttataaa |
25794391 |
T |
|
| Q |
156 |
ctacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaat |
255 |
Q |
| |
|
|||| ||||||||||||| |||| | | ||| | | ||| ||| ||||||| |||||| |||||||||| ||||| | ||||||||||| |
|
|
| T |
25794390 |
ctacgtccataaaacgcgataggtctaaaatgcgtctcacaaaattcataggaacttcagttggcataagacattcttcatttatatctttccaagcatc |
25794291 |
T |
|
| Q |
256 |
tgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgt |
355 |
Q |
| |
|
|||| |||| || ||||||||| |||||||||||||||| | |||||| |||||||| || || || |||||| |||||||| ||||||| || |
|
|
| T |
25794290 |
aagaattctctttcggccttcttgaatggcagcttccctagacacatcatattctttcatataacactccaggaatgaggaaacatgttctcttttttgt |
25794191 |
T |
|
| Q |
356 |
tcaaactatg |
365 |
Q |
| |
|
|||||||||| |
|
|
| T |
25794190 |
tcaaactatg |
25794181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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