View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2205_low_23 (Length: 250)

Name: NF2205_low_23
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2205_low_23
NF2205_low_23
[»] chr4 (10 HSPs)
chr4 (1-238)||(20874146-20874383)
chr4 (78-235)||(11555361-11555517)
chr4 (78-235)||(17335056-17335212)
chr4 (77-230)||(16285646-16285799)
chr4 (77-230)||(15873495-15873647)
chr4 (78-235)||(11935878-11936033)
chr4 (54-140)||(11331283-11331369)
chr4 (77-235)||(12228375-12228532)
chr4 (70-233)||(8807711-8807872)
chr4 (177-235)||(9563747-9563805)
[»] chr5 (13 HSPs)
chr5 (7-235)||(24562594-24562818)
chr5 (7-235)||(24603628-24603852)
chr5 (1-140)||(17445824-17445959)
chr5 (72-144)||(24614835-24614907)
chr5 (72-144)||(24711233-24711305)
chr5 (72-144)||(24744229-24744301)
chr5 (72-144)||(24756995-24757067)
chr5 (78-230)||(24832591-24832741)
chr5 (89-235)||(17014713-17014858)
chr5 (193-235)||(24671203-24671245)
chr5 (193-235)||(24707979-24708021)
chr5 (193-235)||(24740973-24741015)
chr5 (193-235)||(24753742-24753784)
[»] chr7 (9 HSPs)
chr7 (53-235)||(37946403-37946585)
chr7 (77-230)||(20025336-20025489)
chr7 (77-235)||(16059885-16060044)
chr7 (77-235)||(48376135-48376293)
chr7 (77-235)||(22615303-22615464)
chr7 (78-235)||(9079681-9079838)
chr7 (98-210)||(13486390-13486502)
chr7 (77-235)||(4532323-4532481)
chr7 (77-144)||(11654964-11655031)
[»] chr1 (3 HSPs)
chr1 (70-235)||(51659273-51659438)
chr1 (104-235)||(1567332-1567463)
chr1 (77-231)||(13882893-13883048)
[»] scaffold0218 (1 HSPs)
scaffold0218 (77-235)||(13712-13870)
[»] chr3 (11 HSPs)
chr3 (77-235)||(13927595-13927753)
chr3 (77-235)||(4713423-4713581)
chr3 (77-235)||(13929333-13929491)
chr3 (77-230)||(16613845-16613998)
chr3 (77-230)||(22045255-22045408)
chr3 (77-230)||(14482175-14482328)
chr3 (77-230)||(16363191-16363343)
chr3 (133-235)||(14063106-14063208)
chr3 (77-187)||(17790328-17790438)
chr3 (77-187)||(19098770-19098880)
chr3 (77-235)||(14055651-14055809)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-235)||(130123-130288)
[»] chr6 (6 HSPs)
chr6 (77-232)||(14980889-14981044)
chr6 (77-230)||(8404386-8404538)
chr6 (7-140)||(977222-977351)
chr6 (72-235)||(10907387-10907549)
chr6 (77-235)||(10641929-10642083)
chr6 (112-230)||(9190274-9190392)
[»] chr2 (7 HSPs)
chr2 (98-235)||(23661443-23661580)
chr2 (77-229)||(24786072-24786223)
chr2 (77-235)||(44587012-44587170)
chr2 (70-229)||(13361209-13361369)
chr2 (69-210)||(32252683-32252823)
chr2 (83-229)||(27470740-27470884)
chr2 (72-230)||(16858172-16858332)
[»] scaffold0145 (1 HSPs)
scaffold0145 (77-230)||(11917-12070)
[»] scaffold0239 (1 HSPs)
scaffold0239 (77-230)||(21765-21918)
[»] scaffold0063 (1 HSPs)
scaffold0063 (77-235)||(28885-29041)
[»] scaffold0385 (1 HSPs)
scaffold0385 (77-230)||(13591-13743)
[»] scaffold0601 (1 HSPs)
scaffold0601 (77-230)||(5459-5611)
[»] scaffold1001 (1 HSPs)
scaffold1001 (77-144)||(879-946)
[»] chr8 (1 HSPs)
chr8 (174-235)||(24505499-24505560)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20874146 - 20874383
Alignment:
Q  1 catgacgatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20874146 catgacgatattttgtaatttggtgacgtcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtg 20874245  T
Q  101 atttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20874246 atttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccaatgaaatttatttaatgtgcgtgttttttcct 20874345  T
Q  201 attattatgtcatggcaggatttctcaccctttatatt 238  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20874346 attattatgtcatggcaggatttctcacgctttatatt 20874383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 11555517 - 11555361
Alignment:
Q  78 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 177  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||  ||||||||| |||||||||| |  || || || ||| ||||  | ||| ||||    
T  11555517 tgtgaaaatgatgtgttgcagtgatatgtgaaa-gaagagattatgaataataattattgagagtgaagatatggtggaaattatattattttgatattt 11555419  T
Q  178 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  11555418 atttaatatgcgtgtttttccctattattatgttatgacaggatttctcaccccttat 11555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 17335212 - 17335056
Alignment:
Q  78 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 177  Q
    |||||| |||||||| ||| ||||| ||||||| || ||||||||| ||||||| |||||||||||||| |||| | |||||| ||||| | ||| ||||    
T  17335212 tgtgaatatgatgtgctgctgtgatatgtgaaatgaggagattatatataataactgttgagagtgatgggataatggagattatattcttttgatattt 17335113  T
Q  178 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||| || ||| |||||||||||||||||| |||| |||||||| ||||| ||||    
T  17335112 atttaat-tgtgtgctttttcctattattatgttatggaaggatttcccaccccttat 17335056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 16285646 - 16285799
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||||||||||||||   ||||| ||||||||||||| ||||| ||||||||  |||| |||||| |  || || |||||| | ||  | ||| |||    
T  16285646 gtgtgaaaatgatgtgttttagtgatctgtgaaaagaagatattatgcataataaccgttgggagtgaagatatggtggagattattttattttgatatt 16285745  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||    
T  16285746 tatttaatatgcgtgtttttccctattcttatgttatggtaggatttctcaccc 16285799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 15873495 - 15873647
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| ||| |||| ||  ||||| ||||||| ||||| |||||||||| ||| || ||||||||||| |||||| |||| | ||||| | ||| |||    
T  15873495 gtgtgaagatgttgtgctgttgtgatatgtgaaatgaagacattatacatagtaactgctgagagtgatgagatagtggagactatattcttttgatatt 15873594  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||  ||  |||||||| || ||||| ||||| |||||||||||||    
T  15873595 tatttaatgtgaatg-cttttcctaataatatgttatggctggatttctcaccc 15873647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 11936033 - 11935878
Alignment:
Q  78 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgaga-gtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||| ||||| |||||||| || ||||||||| || ||||||||||| ||||||||||||| |  ||||| ||||||||||||||||| | ||||  ||     
T  11936033 tgtggaaatggtgtgttgcagttatttgtgaagaggagagattatacttaataattgttgaaatttgatgagatagtagagattgtatccttatgttata 11935934  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    || |||   || ||| |||| |||||||||||   ||||||| ||||||||||| ||||    
T  11935933 taattataatgtgtgcttttccctattattat---atggcagaatttctcaccccttat 11935878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 11331369 - 11331283
Alignment:
Q  54 tgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgaga 140  Q
    ||||||||||| |   |||||||||||||||||||||||||  |||||| ||||||   |||||||||||||| || ||||||||||    
T  11331369 tgatgtttatgtttggtgtttatgtgtgaaaatgatgtgtttacgtgatatgtgaaccaaagagattatacattatgattgttgaga 11331283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 12228532 - 12228375
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||  ||||||||||  ||||| ||||||||||||||||||| | |||||| |||||||||||| |  || || | |||| | ||  | ||  |||    
T  12228532 gtgtgaaggtgatgtgttgttgtgatctgtgaaaagaagagattatgcgtaataactgttgagagtgaagatatggt-gggattattttattttgttatt 12228434  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||  |||||| |||| ||||||||||||| ||| |||||||| |||||| ||||    
T  12228433 tatttaacatgcgtgcttttccctattattatgttatgtcaggatttatcaccccttat 12228375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 8807872 - 8807711
Alignment:
Q  70 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 169  Q
    ||||||||||||||||||||||||||  ||||| ||  ||  ||||||||||||||| ||   ||||||||   ||| |||| |||||||| ||||  |     
T  8807872 tgtttatgtgtgaaaatgatgtgttgttgtgatatgataat-gaagagattatacatgatggatgttgagaca-atgtgataatagagattatatttttc 8807775  T
Q  170 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacccttt 233  Q
    | |   ||||| ||||||||||||||  |||||  |||||| ||||| ||||||||||||||||    
T  8807774 taatgcttattaaatgtgcgtgttttcccctatgtttatgttatggctggatttctcacccttt 8807711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 9563805 - 9563747
Alignment:
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||| ||||| ||| ||| | ||||||||||| ||||||||||||||||||| ||||    
T  9563805 tatttattgtgcatgtgtttccatattattatgttatggcaggatttctcaccccttat 9563747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 24562818 - 24562594
Alignment:
Q  7 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 106  Q
    |||||||||| |||||||||| || || |||||    |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24562818 gatattttgtgatttggtgacgtcatggatgat----gtgtaattgttgatgtttatgctaattgtttatgtgtgaaaataatgtgttgtcgtgatttgt 24562723  T
Q  107 gaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattatt 206  Q
    |||||||| ||  ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  24562722 gaaaagaaaaggctatacatgataaccgttgagagtgatgcgatagtagaaattgtattcctatgaaatttatttaatgtgcgtgcttttccctattatt 24562623  T
Q  207 atgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||||||||| ||||    
T  24562622 atgttatggcaggatttctcaccccttat 24562594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 24603852 - 24603628
Alignment:
Q  7 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 106  Q
    |||||||||| |||||||||| || || |||||    |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  24603852 gatattttgtgatttggtgacgtcatggatgat----gtgtaattgttgatgtttatgctaattgtttatgtgtgaaaataatgtgttgtcgtgatttgt 24603757  T
Q  107 gaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattatt 206  Q
    |||||||| ||  ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  24603756 gaaaagaaaaggctatacatgataaccgttgagagtgatgcgatagtagaaattgtattcctatgaaatttatttaatgtgcgtgcttttccctattatt 24603657  T
Q  207 atgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||||||||| ||||    
T  24603656 atgttatggcaggatttctcaccccttat 24603628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 17445959 - 17445824
Alignment:
Q  1 catgacgatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtg 100  Q
    ||||| ||||||||||||||||||||| || ||||||||    |||||||| |||||||||||| |||||||||||||||||||||||||||||   |||    
T  17445959 catgatgatattttgtaatttggtgacgtcatgaatgat----gtgtaattgttgatgtttatgttaattgtttatgtgtgaaaatgatgtgttattgtg 17445864  T
Q  101 atttgtgaaaagaagagattatacataataattgttgaga 140  Q
    |  |||| || |||||||||||| ||||| ||||||||||    
T  17445863 acatgtggaaggaagagattatatataatgattgttgaga 17445824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 24614907 - 24614835
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24614907 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24614835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 24711305 - 24711233
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24711305 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24711233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 24744301 - 24744229
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24744301 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24744229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 24757067 - 24756995
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24757067 tttaagtgggaaaatgatgtgttgttgtgatatgtgaaaagaagagattacacataataattgttgagagtga 24756995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 24832591 - 24832741
Alignment:
Q  78 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 177  Q
    ||||||||||| ||| ||  |||||||||||||||  ||||||||  ||||||| |||||||||||| |  || || |||||| ||||    ||| |||     
T  24832591 tgtgaaaatgacgtgctgtagtgatttgtgaaaag--gagattatgtataataactgttgagagtgaagatatggtggagattatattatcttgatattg 24832688  T
Q  178 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    ||||||| || | |||||| ||||||||||||| |||||||||||||||||||    
T  24832689 atttaatatgtgcgtttttccctattattatgttatggcaggatttctcaccc 24832741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 17014858 - 17014713
Alignment:
Q  89 tgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgc 188  Q
    |||| |||||| ||| || || ||||||||| |||  |||||| |||||| | ||||| ||||||||||||||||||||||||  ||||| |  ||||||    
T  17014858 tgtgctgccgttattagtaaagagaagagatcatatttaataactgttgaaattgatgagatagtagagattgtattcctatggtatttaatcgatgtgc 17014759  T
Q  189 gtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
     || |||| ||||| ||||||| || |  ||||||||||||||||||    
T  17014758 ttgcttttccctatcattatgttat-gatggatttctcaccctttat 17014713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 24671245 - 24671203
Alignment:
Q  193 tttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24671245 ttttccctattattatgttatggcaggatttctcaccccttat 24671203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 24708021 - 24707979
Alignment:
Q  193 tttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24708021 ttttccctattattatgttatggcaggatttctcaccccttat 24707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 24741015 - 24740973
Alignment:
Q  193 tttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24741015 ttttccctattattatgttatggcaggatttctcaccccttat 24740973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 24753784 - 24753742
Alignment:
Q  193 tttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24753784 ttttccctattattatgttatggcaggatttctcaccccttat 24753742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 37946403 - 37946585
Alignment:
Q  53 ttgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatag 152  Q
    |||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |||||||||| ||  |    
T  37946403 ttgatgtttatgataaatgtttatgtgtaaaaatgaagtgttgctgtgatatgtgaaatgaagagattatacataataactgtggagagtgatgagacgg 37946502  T
Q  153 tagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    | |||||| ||||| | ||| |||||||||| |||| |  |||||||||||||||||| ||| || ||||| |||||| ||||    
T  37946503 tggagattatattcttttgatatttatttaaggtgcatactttttcctattattatgttatgacatgatttatcaccccttat 37946585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 20025489 - 20025336
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||||  |  ||  | |||||| ||||  | ||| |||    
T  20025489 gtgtgaaaatgatgtgctgatgtgatatgtgaaaagaagagattatacataataattgttgagagtggagatatgttggagattatattattttgatatt 20025390  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||| ||||    
T  20025389 tatttaatatgcatgtttttccctattattatgttatggcaggatttcttaccc 20025336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 16060044 - 16059885
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  16060044 gtgtgaatatgatgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 16059945  T
Q  177 tattt-aatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  16059944 tattttaatgtgcatgtttttccctattattttgttatggcaggatttctcaccccttat 16059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 48376293 - 48376135
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| ||||||||||||  |||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  48376293 gtgtgaatatgatgtgttgctctgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 48376194  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||||||| || |||| ||| ||||| ||| ||||||||||||||||||| ||||    
T  48376193 tatttaatgtgcatgcttttccctgttattttgttatggcaggatttctcaccccttat 48376135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 22615303 - 22615464
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagt---gatgcgatagtagagattgtattcctatgaa 173  Q
    ||||||||||||| || |   ||||||||||||||||||||||||| |||||||| | ||||||||   || |  ||||| |||||| ||||  | |||     
T  22615303 gtgtgaaaatgatatgctttagtgatttgtgaaaagaagagattatgcataataactattgagagtgaagaagatatagtggagattatattattttgat 22615402  T
Q  174 atttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||||| | |  |||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  22615403 atttatttagtatatgtgtttttccctattattatgttatggcaggatttctcaccccttat 22615464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 9079838 - 9079681
Alignment:
Q  78 tgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaattt 177  Q
    |||||| ||||||||  || ||||  ||| ||| |||||||||||||||| ||| |||||||| |  || |||||| || | | ||||| | ||| ||||    
T  9079838 tgtgaatatgatgtgcagctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatcttgagatagtggaaactatattcttttgatattt 9079739  T
Q  178 atttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||||||| || ||||  |||||||||||| |||||| |||||||||||||||||    
T  9079738 atttaatgtgcatgcttttctctattattatgttatggcatgatttctcaccctttat 9079681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 13486390 - 13486502
Alignment:
Q  98 gtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtttttt 197  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||| |  ||| |||||||| ||||  | ||| ||||||||||| || | ||||||     
T  13486390 gtgatttgtgaaaagaagatattatgcataataactgttgagagtgaagatatattagagattatattattttgatatttatttaatatgtgagtttttc 13486489  T
Q  198 cctattattatgt 210  Q
    |||||||||||||    
T  13486490 cctattattatgt 13486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 4532323 - 4532481
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||||||| ||||| ||  ||| | | |||||||||||| ||| || ||||||||||| |||||| |||| | ||||| | | | |||    
T  4532323 gtgtgaagatgatgtgttgctgtgatatggaaaatggaaagattatacatagtaactgctgagagtgatgagatagtggagaatatattcttttaatatt 4532422  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||| |||| ||  ||||||||||||||||| ||| ||||||  ||||||| ||||    
T  4532423 tatttaacgtgcatgcattttcctattattatgttatgacaggatacctcaccccttat 4532481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 11655031 - 11654964
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||||||||||||||| | | ||||||||||||||||||||||||| |||||||| |||  |||||||    
T  11655031 gtgtgaaaatgatgtgcttcagtgatttgtgaaaagaagagattatgcataataactgtcaagagtga 11654964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 51659273 - 51659438
Alignment:
Q  70 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 169  Q
    |||||| ||||||| |||| ||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| |     
T  51659273 tgtttaagtgtgaatatgacgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttt 51659372  T
Q  170 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  51659373 tgatatttatttaatgtgcatgtttttccctattattatgttatggcaggatttctcaccccttat 51659438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 1567332 - 1567463
Alignment:
Q  104 tgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctatt 203  Q
    ||||||| |||||||||||||||||||| | |||| |||||||||| |||||  ||| ||||| | | | ||||||||||||||| ||| ||| ||||||    
T  1567332 tgtgaaatgaagagattatacataataactattgatagtgatgcgacagtaggaattatattctttttatatttatttaatgtgcatgtgtttccctatt 1567431  T
Q  204 attatgtcatggcaggatttctcaccctttat 235  Q
    ||||||| || |||||||||||||||| ||||    
T  1567432 attatgttatagcaggatttctcaccccttat 1567463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 13882893 - 13883048
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| |||||||||||  ||||| |||||| |||| | ||||| | ||| |||    
T  13882893 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaattgttgagtctgatgagatagtggagactatattcttttgatatt 13882992  T
Q  177 tatttaatgtgcgtgttttttcctatta-ttatgtcatggcaggatttctcaccct 231  Q
    |||||||||||| ||||||| ||||||| || | | |||| |||||||||||||||    
T  13882993 tatttaatgtgcatgtttttccctattatttttattatggtaggatttctcaccct 13883048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 13870 - 13712
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||||||| ||||  ||| ||| |||||||||||||||| ||| | |||||| ||||| |||||| |||| ||||||| | ||| |||    
T  13870 gtgtgaatatgatgtgttgctgtgacatgtaaaatgaagagattatacatagtaactattgagaatgatgagatagtggagaatgtattcttttgatatt 13771  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||||||| || |||| ||||||||| ||| |||||||||||||| |||||||||    
T  13770 tatttaatgtgcatgcttttccctattattttgttatggcaggatttcttaccctttat 13712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 13927595 - 13927753
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||| ||  || || ||||||| |||||||||||||||||||| |||||||||||||| || |||   |||| ||||| | ||| |||    
T  13927595 gtgtgaaaatgatgtgctgttgttatatgtgaaatgaagagattatacataataactgttgagagtgatgagacagtgtggattatattcttttgatatt 13927694  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    || ||||||||||||||||| ||||||||||||| ||| || |||||||||||| ||||    
T  13927695 taattaatgtgcgtgtttttccctattattatgttatgacaagatttctcaccccttat 13927753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 4713423 - 4713581
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||||||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  4713423 gtgtgaatatgatgtgttgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttttgatatt 4713522  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||||||| || |||| ||||||||| ||| |||||| |||||||||||| ||||    
T  4713523 tatttaatgtgcatgcttttccctattattttgttatggcatgatttctcaccccttat 4713581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 13929333 - 13929491
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||| |||  |||| ||| ||| |||| |||||||||||||||||||||||||||||| || |||   |||| ||||| | ||| |||    
T  13929333 gtgtgaaaatgatgtgctgctatgatatgttaaatgaagggattatacataataattgttgagagtgatgagacagtgtggattatattcttttgatatt 13929432  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    || ||||||||| ||||||| ||||||||||||| |||  |||||||||||||| ||||    
T  13929433 taattaatgtgcttgtttttccctattattatgttatgataggatttctcaccccttat 13929491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 16613998 - 16613845
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||  |||    
T  16613998 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaactgttgagactgatgagatagtggagactatattcttttggtatt 16613899  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  16613898 tatttaatgtgcatgcttttccctattattttattatggcaggatttctcaccc 16613845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 22045255 - 22045408
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||  |||    
T  22045255 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaactgttgagactgatgagatagtggagactatattcttttggtatt 22045354  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  22045355 tatttaatgtgcatgcttttccctattattttattatggcaggatttctcaccc 22045408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 14482175 - 14482328
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||||| ||||| |  || ||  ||||| ||||    ||| |||    
T  14482175 gtgtgaagatgatgtgctgtagtgatttgtgaaaagaagagattatgcataataactgttgacagtgaagatatggtgaagattatattatcttgatatt 14482274  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||| || |||||||| |||||||||| || ||| ||| |||||||||||    
T  14482275 tatttaatatgtgtgtttttccctattattacgttatgacagaatttctcaccc 14482328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 16363191 - 16363343
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| ||||| |||||   |||||||||||||||| ||| || |||||| |||| |||||| |||| | ||||||| | | |||    
T  16363191 gtgtgaatatgatgtgctgctgtgatatgtgatctgaagagattatacatagtaactgctgagagagatgagatagtggagactatattccttttatatt 16363290  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  16363291 tatttaatgtgcatg-cttttcctaataatatgttatggctggatttctcaccc 16363343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 14063106 - 14063208
Alignment:
Q  133 tgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctt 232  Q
    |||||||| | ||| || ||| |||| | ||||| | ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |    
T  14063106 tgttgagaatcatgagaaagtggagactatattcttttgatatttatttaatgtgcatgtttttccctattattatgttatggcaggatttctcacccct 14063205  T
Q  233 tat 235  Q
    |||    
T  14063206 tat 14063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 17790438 - 17790328
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||| ||||| ||  ||||||||| ||||||||||||||| |||||||| |||||||||||| |  || || |||||| ||||  | ||| |||    
T  17790438 gtgtgaaaataatgtgctgtagtgatttgtaaaaagaagagattatgcataataactgttgagagtgaagatatggtggagattatattattttgatatt 17790339  T
Q  177 tatttaatgtg 187  Q
    |||||||||||    
T  17790338 tatttaatgtg 17790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 19098880 - 19098770
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||| ||||| ||  ||||||||| ||||||||||||||| |||||||| |||||||||||| |  || || |||||| ||||  | ||| |||    
T  19098880 gtgtgaaaataatgtgctgtagtgatttgtaaaaagaagagattatgcataataactgttgagagtgaagatatggtggagattatattattttgatatt 19098781  T
Q  177 tatttaatgtg 187  Q
    |||||||||||    
T  19098780 tatttaatgtg 19098770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 14055651 - 14055809
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||  ||||  ||| ||| ||||| || ||||||| ||| |||||||| | ||| |||||| |||| | ||||  | ||  |||    
T  14055651 gtgtgaatatgatgtgctgttgtgacatgtaaaatgaagatatcatacatagtaactgttgagaatcatgagatagtggagactatattattttggtatt 14055750  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||||||| || |||| | ||||||||||| || || ||||||||||||| ||||    
T  14055751 tatttaatgtgcatgcttttccatattattatgttattgctggatttctcaccccttat 14055809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 130288 - 130123
Alignment:
Q  70 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 169  Q
    |||||| |||| || |||||||| ||| ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| |     
T  130288 tgtttaagtgtaaatatgatgtgctgctgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagactatattcttt 130189  T
Q  170 tgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||| ||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||| ||||    
T  130188 tgatatttatttaatgtgcatgctttttcctattattttgttatggcaggatttctcaccccttat 130123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 14980889 - 14981044
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| |||| |||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| | ||||| | ||| |||    
T  14980889 gtgtgaatatgatgtgctgctgtgacttgtaaaatgaagagattatacatagtaaatgttgagaatgatgagatagtggagactatattcttttgatatt 14980988  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctt 232  Q
    |||||||||||| || ||||  |||||||| | | |||||||||||||||||||||    
T  14980989 tatttaatgtgcatgcttttctctattattttattatggcaggatttctcaccctt 14981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 8404386 - 8404538
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| ||||| ||||||| |||||||||||||||| ||| || ||||||||||| |||||| ||||   ||||| | ||| |||    
T  8404386 gtgtgaagatgatgtgctgctgtgatatgtgaaatgaagagattatacatagtaactgctgagagtgatgagatagtggagaccatattcttttgatatt 8404485  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  8404486 tatttaatgtgcatg-cttttcctactaatatgttatggctggatttctcaccc 8404538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 977351 - 977222
Alignment:
Q  7 gatattttgtaatttggtgacatcgtgaatgatcgatgtgtaattattgatgtttatgctaattgtttatgtgtgaaaatgatgtgttgccgtgatttgt 106  Q
    |||||||||||||||| |||| || ||||||||    |||||||| |||||||| | | ||||| ||||||||||||||||||||||||  ||||  |||    
T  977351 gatattttgtaatttgatgacgtcatgaatgat----gtgtaattgttgatgttaaagttaattatttatgtgtgaaaatgatgtgttgttgtgacatgt 977256  T
Q  107 gaaaagaagagattatacataataattgttgaga 140  Q
    |||| |||||||||||||||||| | ||||||||    
T  977255 gaaatgaagagattatacataatgactgttgaga 977222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 10907387 - 10907549
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatg 171  Q
    |||| |||||||||||||||| |   ||||| | ||||||||||||||||| || ||||| |||||||||||| |  || || |||||| ||||  | ||    
T  10907387 tttaagtgtgaaaatgatgtgctctagtgatctatgaaaagaagagattatgcaaaataactgttgagagtgaagatattgtggagattatattatt-tg 10907485  T
Q  172 aaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    | ||||||||||| |||||| |||| |||||||| |||| ||||||||||||||||||| ||||    
T  10907486 atatttatttaatatgcgtgcttttccctattatcatgttatggcaggatttctcaccccttat 10907549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 10641929 - 10642083
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||| ||  |||||||||||||| |||||||||||    |||| |||||| ||||| |  || || |||||| ||||  | ||| |||    
T  10641929 gtgtgaaaatgatgtgctgtagtgatttgtgaaaataagagattata----ataactgttgaaagtgaagatatggtggagattatattattttgatatt 10642024  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||| ||||||||||| ||||||||||||| ||| || |||||||| ||| ||||    
T  10642025 tatttaatatgcgtgtttttccctattattatgttatgacaagatttctcgccccttat 10642083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 9190392 - 9190274
Alignment:
Q  112 gaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtt-ttttcctattattatgt 210  Q
    ||||| |||||| ||  ||| ||||||| |||| | |||| ||||||||  |||||| ||| |||||||||| ||||||||| |||||||| || |||||    
T  9190392 gaagatattatatatggtaactgttgagggtgaagagataatagagattacattcct-tgatatttatttaacgtgcgtgtttttttcctaataatatgt 9190294  T
Q  211 catggcaggatttctcaccc 230  Q
     || || |||||||||||||    
T  9190293 tattgctggatttctcaccc 9190274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 23661443 - 23661580
Alignment:
Q  98 gtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatttatttaatgtgcgtgtttttt 197  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||| |  || ||| ||||| ||||  | ||| ||||||||||| |||||  ||||     
T  23661443 gtgatatgtgaaaagaagagattatgcataataactgttgagagtgaagatatggtaaagattatattattttgatatttatttaatatgcgttcttttc 23661542  T
Q  198 cctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  23661543 cctattattatgttatggcaggatttctcaccccttat 23661580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 24786223 - 24786072
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||||||||||||| |  |||| |||||||||||||||||||||||||| || |||||||||||| |  || || |||||| ||||  | ||| |||    
T  24786223 gtgtgaaaatgatgtgt-gtagtgaattgtgaaaagaagagattatacataaaaactgttgagagtgaagatatggtggagattatattattctgatatt 24786125  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 229  Q
    ||||| || || |||||||| || |||||||||| ||||||||||||||||||    
T  24786124 tatttgatatgtgtgtttttcccaattattatgttatggcaggatttctcacc 24786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 44587012 - 44587170
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||  |||||||    ||||||||||||  || || |||||| ||||  | ||| | |    
T  44587012 gtgtgaaaatgatgtgctgtagtgatttgtgaaaagaagagattaagcataatacccattgagagtgatgatatggtggagattatattattttgataat 44587111  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||| || |||||||| ||||||||| ||| |||||||||||| |||||| ||||    
T  44587112 tatttaatatgtgtgtttttccctattattttgttatggcaggatttatcaccccttat 44587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 13361369 - 13361209
Alignment:
Q  70 tgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattccta 169  Q
    ||||||||| | |||||||||||||| |||||| |||||| |||||| |||| ||| ||| ||| |||||| ||||| ||||||||||||| ||||  |     
T  13361369 tgtttatgtttcaaaatgatgtgttgtcgtgatatgtgaacagaagatattacacacaatgattcttgaga-tgatgagatagtagagattatatttttg 13361271  T
Q  170 tgaaatttattt----aatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 229  Q
    ||| ||||||||    ||| ||||||  ||||||||||||||||| ||   |||||||||||||    
T  13361270 tgatatttatttattaaatatgcgtg--ttttcctattattatgttattttaggatttctcacc 13361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 32252683 - 32252823
Alignment:
Q  69 ttgtttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcct 168  Q
    ||||||| |||||||||| ||||| ||  ||| | ||||||| |||||||||||| ||  | | ||||||| |||| | ||| ||||||||| |||||||    
T  32252683 ttgtttaagtgtgaaaatcatgtgctgttgtgttatgtgaaatgaagagattatatatggtgactgttgagggtgaagagatggtagagattatattcct 32252782  T
Q  169 atgaaatttatttaatgtgcgtgttttttcctattattatgt 210  Q
     ||| |||||||||||||| ||| ||||||||| || |||||    
T  32252783 -tgatatttatttaatgtgtgtgctttttcctaataatatgt 32252823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 27470740 - 27470884
Alignment:
Q  83 aaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaat----tta 178  Q
    |||||| |||||||| |||| ||||||  |||||||||||||||||| ||||||||||       ||||||||||||| ||||| | ||| ||    |||    
T  27470740 aaatgaggtgttgccatgatatgtgaaccgaagagattatacataatgattgttgaga------tgatagtagagattatattcttgtgatatttactta 27470833  T
Q  179 tttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcacc 229  Q
    | |||| |||||| |||| | |||| |||||| ||||||||||||||||||    
T  27470834 tctaatatgcgtgcttttccttatttttatgttatggcaggatttctcacc 27470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 16858332 - 16858172
Alignment:
Q  72 tttatgtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagaga---ttatacataataattgttgagagtgatgcgatagtagagattgtattcct 168  Q
    ||||||||||||||||||||||||  || || || |||| |||||||   |||||||||||  |||||||||   ||| ||||||||||||| ||||| |    
T  16858332 tttatgtgtgaaaatgatgtgttgtggtcatatgagaaatgaagagattattatacataatggttgttgaga-caatgtgatagtagagattatattctt 16858234  T
Q  169 atgaaatttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
      ||   ||||| ||||||||||||| | |||||  |||||| || || |||||||||||||    
T  16858233 cggatgcttattaaatgtgcgtgtttatccctatgtttatgttatagctggatttctcaccc 16858172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 12070 - 11917
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||||||||  ||||| ||||||||||||| ||||| ||||||||  |||| |||||| |  || || |||||| | ||  | ||| |||    
T  12070 gtgtgaaaatgatgtgttgtagtgatctgtgaaaagaagatattatgcataataaccgttgggagtgaagatatggtggagattattttattttgatatt 11971  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||    
T  11970 tatttaatatgcgtgtttttccctattcttatgttatggtaggatttctcaccc 11917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 21765 - 21918
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| |||| |||| ||  |||||||||||||||| ||| |||||||| |||||  ||||| |||| | ||||| | ||| ||     
T  21765 gtgtgaatatgatgtgctgctgtgacttgtaaactgaagagattatacatagtaactgttgagactgatgaaatagtggagactatattcttttgatatg 21864  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| || |||| ||||||||| | | |||||||||||||||||||    
T  21865 tatttaatgtgcatgcttttccctattatttttttatggcaggatttctcaccc 21918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 28885 - 29041
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||  ||||  ||| ||| |||||||||||||||| ||| |||||||| ||||| |||||| |||| |  |||| | ||| |||    
T  28885 gtgtgaatatgatgtgctgttgtgacatgtaaaatgaagagattatacatagtaactgttgagaatgatgagatagtggagact--attcttttgatatt 28982  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    |||||||||||| || |||| ||||||||| ||| |||| |||||||||||||| ||||    
T  28983 tatttaatgtgcatgcttttccctattattttgttatggtaggatttctcaccccttat 29041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 13743 - 13591
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    ||||||| |||||||| ||| ||||| ||||| | |||||||||||||||| ||| || |||||| |||| |||||| |||| | ||||| | | | |||    
T  13743 gtgtgaatatgatgtgctgctgtgatatgtgatatgaagagattatacatagtaactgctgagagagatgagatagtggagactatattctttttatatt 13644  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
    |||||||||||| ||  |||||||| || ||||| ||||| |||||||||||||    
T  13643 tatttaatgtgcatg-cttttcctaataatatgttatggctggatttctcaccc 13591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 5459 - 5611
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtgatgcgatagtagagattgtattcctatgaaatt 176  Q
    |||||||||||||| | ||  ||||| ||||||  ||||||| |||| ||| |||||||||||||||  | |||  | | ||||  ||||||  || |||    
T  5459 gtgtgaaaatgatgagatggtgtgatatgtgaattgaagagaatatatatagtaattgttgagagtgtagtgatgatggtgatttcattccttcgatatt 5558  T
Q  177 tatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccc 230  Q
     |||||||||| || ||||| ||||||||||||| || ||||||||||||||||    
T  5559 -atttaatgtgtgtatttttccctattattatgttatagcaggatttctcaccc 5611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 946 - 879
Alignment:
Q  77 gtgtgaaaatgatgtgttgccgtgatttgtgaaaagaagagattatacataataattgttgagagtga 144  Q
    |||||||||||||||| |   |||||||||||||||||||||||||  ||||||| | ||||||||||    
T  946 gtgtgaaaatgatgtgctttagtgatttgtgaaaagaagagattatgaataataactattgagagtga 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 24505560 - 24505499
Alignment:
Q  174 atttatttaatgtgcgtgttttttcctattattatgtcatggcaggatttctcaccctttat 235  Q
    ||||||||||| ||| || |||||||||||||||||| ||   |||||||||||||| ||||    
T  24505560 atttatttaatatgcatgctttttcctattattatgttattataggatttctcaccccttat 24505499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University