View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_24 (Length: 242)
Name: NF2205_low_24
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5671585 - 5671361
Alignment:
| Q |
1 |
atcaataacacacacacattcctatctacattaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgtttcagttaaaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
5671585 |
atcagtaacacacacacattcctatctacattaacacttttctttccaacttcaccgcagtttatctatcatcgtttttcctttcatgtttcagttaaaa |
5671486 |
T |
|
| Q |
101 |
gaatacaactgtgaaatggaagatttaatcaacattaagccaaaggttatactattgaatgtttgcttataaggtataattgatgaactagtcatcagac |
200 |
Q |
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| T |
5671485 |
gaatacaactgtgaaatggaagatttaatcaacattaagccaaaggttatactattgaatgtttgcttataaggtataattgatgaactagtcatcagac |
5671386 |
T |
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| Q |
201 |
atgttcacacaagagacaatgttat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5671385 |
atgttcacacaagagacaatgttat |
5671361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5681082 - 5680857
Alignment:
| Q |
1 |
atcaataacacacacacattcctatctacattaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgtttcagttaaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5681082 |
atcagtaacacacacacattcctatctacattaacatttttctttccaacttcaccgcagtttatctattatcgtttttcctttcttgtttcagttaaaa |
5680983 |
T |
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| Q |
101 |
gaatacaactgtgaaatggaagatttaatcaacattaagccaaaggttatactattgaatgtttgcttataaggtataattgatgaactagtcatcagac |
200 |
Q |
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| T |
5680982 |
gaatacaactgtgaaatgcaagatttaatcaacattaagccaaaggttatactattgaatgtttgcttataaggtataattgatgaactagtcatcagac |
5680883 |
T |
|
| Q |
201 |
atgttcacacaagagacaatgttatt |
226 |
Q |
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| T |
5680882 |
atgttcacacaagagacaatgttatt |
5680857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 5685640 - 5685594
Alignment:
| Q |
23 |
tatctacattaacacttttctttccaacttcaccgcagtttatctat |
69 |
Q |
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| T |
5685640 |
tatctacattaacccttttctttccaaattcaccgcagtttatctat |
5685594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 5795800 - 5795756
Alignment:
| Q |
140 |
ccaaaggttatactattgaatgtttgcttataaggtataattgat |
184 |
Q |
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| T |
5795800 |
ccaaaggttatattattgtatgtttgcttataaggtataattgat |
5795756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 5795941 - 5795877
Alignment:
| Q |
27 |
tacattaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgttt |
91 |
Q |
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|||||||||||| ||||||||||||||||| |||||||| || |||||||| |||||| ||||| |
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| T |
5795941 |
tacattaacactattctttccaacttcacccaagtttatcaatcatcgttttccctttcatgttt |
5795877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 45384719 - 45384642
Alignment:
| Q |
30 |
attaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgtttcagttaaaagaataca |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
45384719 |
attaacccttttctttccaacttcaccgcagtttatctatcaccgtttccattttcttgtttcagttaaaagaataca |
45384642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 41486169 - 41486251
Alignment:
| Q |
23 |
tatctacattaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgtttcagttaaaagaata |
105 |
Q |
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||||| ||| ||| ||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
41486169 |
tatcttcatgaacccttttctttccaacttcaccgcagtttatctatcacagtttcccttttcttgtttcagttaaaagaata |
41486251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 41483062 - 41483144
Alignment:
| Q |
23 |
tatctacattaacacttttctttccaacttcaccgcagtttatctatgatcgtttttcctttcttgtttcagttaaaagaata |
105 |
Q |
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|||||| || ||| |||||||||| |||||||| ||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
41483062 |
tatctatatgaacccttttctttcaaacttcactgcagtttatctatcacagtttcccttttcttgtttcagttaaaagaata |
41483144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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