View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2205_low_26 (Length: 238)

Name: NF2205_low_26
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2205_low_26
NF2205_low_26
[»] chr4 (3 HSPs)
chr4 (1-220)||(20873934-20874152)
chr4 (108-213)||(12356467-12356572)
chr4 (168-213)||(20873907-20873952)
[»] chr5 (5 HSPs)
chr5 (58-220)||(17457936-17458110)
chr5 (8-212)||(24562825-24563041)
chr5 (8-212)||(24603859-24604075)
chr5 (170-220)||(17458162-17458212)
chr5 (3-52)||(17445955-17446004)
[»] scaffold1202 (2 HSPs)
scaffold1202 (108-220)||(978-1089)
scaffold1202 (63-113)||(921-971)
[»] chr6 (3 HSPs)
chr6 (5-160)||(977355-977507)
chr6 (41-96)||(8885841-8885896)
chr6 (110-147)||(8885923-8885960)
[»] scaffold0150 (1 HSPs)
scaffold0150 (109-220)||(6905-7015)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20874152 - 20873934
Alignment:
Q  1 cgtcatgtatatgcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtcgctactcaccaaaattgtatgtcagagttctgttaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20874152 cgtcatgtatatgcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtctctactcaccaaaattgtatgttagagttctgttaatga 20874053  T
Q  101 acatacacgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcac 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20874052 -catacacgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcac 20873954  T
Q  201 caaaatttatatagttactc 220  Q
    ||||||||||||||||||||    
T  20873953 caaaatttatatagttactc 20873934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 12356572 - 12356467
Alignment:
Q  108 cgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcaccaaaatt 207  Q
    ||||||||||||||||||||||||||||||||| || |||||| | ||||  ||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  12356572 cgtcaccagaatcctaatcatgatatgatgcattaataaactctctaaatgcaacaccataaaatttacatatttactcaccaataacgtcaccaaaatt 12356473  T
Q  208 tatata 213  Q
    ||||||    
T  12356472 tatata 12356467  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 20873952 - 20873907
Alignment:
Q  168 aaaatttatatatgtactcaccaacaacgtcaccaaaatttatata 213  Q
    ||||||||||||  |||||||||| |||||| ||||||||||||||    
T  20873952 aaaatttatatagttactcaccaataacgtctccaaaatttatata 20873907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 17457936 - 17458110
Alignment:
Q  58 ggtcgctactcaccaaaattgtatgtcagagttctgttaatgaacatacacgtca------------ccagaatcctaatcatgatatgatgcatgaaga 145  Q
    |||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||            |||||||||||||||||||||||||||||||||    
T  17457936 ggtctctactcatcaaaattgtatgtcagagttatgttactgaacatacacgtcattagaatcgttaccagaatcctaatcatgatatgatgcatgaaga 17458035  T
Q  146 aactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcaccaaaatttatatagttactc 220  Q
    |||| |||||||| ||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  17458036 aacttaccaaatacaacaccatagaatttatatatttactcaccaataacgtcaccaaaatttatatagttactc 17458110  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 24562825 - 24563041
Alignment:
Q  8 tatatgcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtcgctactcaccaaaattgtatgtcagagttctgttaatgaacataca 107  Q
    |||||||||| |||||||| |||||||| | ||||||||||||||||| ||||  ||||||| |||||||||||||||  ||| ||||| ||||||||||    
T  24562825 tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaattgtatgtcaatgttatgttagtgaacataca 24562924  T
Q  108 ------------cgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaac 195  Q
                ||||||||||||| |||||||||||||||||||||| ||| |||  ||||| ||| ||||| |||||| |||| ||||||| || ||     
T  24562925 cgtcaccagaatcgtcaccagaatcttaatcatgatatgatgcatgaataaattcattaaatacaacaccatagaatttacatatttactcacgaataat 24563024  T
Q  196 gtcaccaaaatttatat 212  Q
    ||||||| |||||||||    
T  24563025 gtcaccagaatttatat 24563041  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 24603859 - 24604075
Alignment:
Q  8 tatatgcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtcgctactcaccaaaattgtatgtcagagttctgttaatgaacataca 107  Q
    |||||||||| |||||||| |||||||| | ||||||||||||||||| ||||  ||||||| |||||||||||||||  ||| ||||| ||||||||||    
T  24603859 tatatgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaattgtatgtcaatgttatgttagtgaacataca 24603958  T
Q  108 ------------cgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaac 195  Q
                ||||||||||||| |||||||||||||||||||||| ||| |||  ||||| ||| ||||| |||||| |||| ||||||| || ||     
T  24603959 cgtcaccagaatcgtcaccagaatcttaatcatgatatgatgcatgaataaattcattaaatacaacaccatagaatttacatatttactcacgaataat 24604058  T
Q  196 gtcaccaaaatttatat 212  Q
    ||||||| |||||||||    
T  24604059 gtcaccagaatttatat 24604075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 17458162 - 17458212
Alignment:
Q  170 aatttatatatgtactcaccaacaacgtcaccaaaatttatatagttactc 220  Q
    ||||||||||  |||||||||||| |||||||| |||||||||| ||||||    
T  17458162 aatttatataattactcaccaacagcgtcaccagaatttatataattactc 17458212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 17445955 - 17446004
Alignment:
Q  3 tcatgtatatgcgaacatgcaactatttcctaatatctatatgcatgccg 52  Q
    ||||||||||||||| |||||||| |||||||| | | ||||||||||||    
T  17445955 tcatgtatatgcgaagatgcaactctttcctaacacccatatgcatgccg 17446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1202 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 978 - 1089
Alignment:
Q  108 cgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcaccaaaatt 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||| |||| |||||||||| |||||||| ||||||    
T  978 cgtcaccagaatcctaatcataatatgatgcatgaagaaactcaccaaatacaacaccat-aaatttacatatttactcaccaataacgtcacaaaaatt 1076  T
Q  208 tatatagttactc 220  Q
    |||||||||||||    
T  1077 tatatagttactc 1089  T

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Target: scaffold1202; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 921 - 971
Alignment:
Q  63 ctactcaccaaaattgtatgtcagagttctgttaatgaacatacacgtcac 113  Q
    ||||||||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  921 ctactcaccaatattatatgtcagagttatgttactgaacatacacgtcac 971  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 977355 - 977507
Alignment:
Q  5 atgtatatgcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtcgctactcaccaaaattgtatgtcagagttctgttaatgaacat 104  Q
    |||||||||| || ||| |||| |||||||| | ||||||||||||||||| || || ||||||||||||||||||| |||||||| ||||| |||||||    
T  977355 atgtatatgcaaagatgtaactctttcctaacacctatatgcatgccggtatcgatctctactcaccaaaattgtatatcagagttatgttactgaacat 977454  T
Q  105 acacgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatata 160  Q
    ||| |||||||||||| | | || || || ||||||||||||||||||||||||||    
T  977455 acatgtcaccagaatcgtca-caaga-at-atgcatgaagaaactcaccaaatata 977507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 8885841 - 8885896
Alignment:
Q  41 atatgcatgccggtaacggtcgctactcaccaaaattgtatgtcagagttctgtta 96  Q
    |||||||| |||||| ||||| |||||||||||||||||||| ||||||| |||||    
T  8885841 atatgcataccggtaccggtctctactcaccaaaattgtatggcagagttatgtta 8885896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 8885923 - 8885960
Alignment:
Q  110 tcaccagaatcctaatcatgatatgatgcatgaagaaa 147  Q
    |||||||||||||||| |||||||||||||||||||||    
T  8885923 tcaccagaatcctaataatgatatgatgcatgaagaaa 8885960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 7015 - 6905
Alignment:
Q  109 gtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcaccaaaattt 208  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||| |||||||||| |||||||| | |||||    
T  7015 gtcaccagaatcataatcatgatatgatgtatgaagaaactcaccaaatacaacaccat-aaatttacatatttactcaccaataacgtcacaagaattt 6917  T
Q  209 atatagttactc 220  Q
     |||||||||||    
T  6916 ttatagttactc 6905  T

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