View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_27 (Length: 236)
Name: NF2205_low_27
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48411993 - 48412212
Alignment:
| Q |
1 |
attaagttgtatcctaaatattataaatttataaacaaaaaatatcttttttgtttcatggnnnnnnnnttattttatatagctgtatttaaacaaagta |
100 |
Q |
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| T |
48411993 |
attaagttgtatcctaaatattataaatttataaacaaaaaatatcttttttgtttaatggaaaaaaaattattttatatagctgtatttaaacaaagta |
48412092 |
T |
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| Q |
101 |
aattannnnnnnaatatgtgatttttatttcaataaacaaacacaaaattgattcttcttgctatgttgtgtccatacaaaccctcggctcgtatgtgcc |
200 |
Q |
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| T |
48412093 |
aattattttttaaatatgtgatttttatttcaataaacaaacacaaaattgattcttcttgctatgttgtgtccatacaaaccctcggctcgtatgtgcc |
48412192 |
T |
|
| Q |
201 |
tggctacgtgatgcacatac |
220 |
Q |
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| T |
48412193 |
tggctacgtgatgcgcatac |
48412212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 2788549 - 2788591
Alignment:
| Q |
118 |
gtgatttttatttcaataaacaaacacaaaattgattcttctt |
160 |
Q |
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| T |
2788549 |
gtgatatttatttcaataaacaaacacaaagttgattcttctt |
2788591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 23082330 - 23082366
Alignment:
| Q |
118 |
gtgatttttatttcaataaacaaacacaaaattgatt |
154 |
Q |
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| T |
23082330 |
gtgatttttatttcgataaacaaacacaaaattgatt |
23082366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 33489443 - 33489479
Alignment:
| Q |
118 |
gtgatttttatttcaataaacaaacacaaaattgatt |
154 |
Q |
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|||||||||||| ||||||||||||||||||| |||| |
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| T |
33489443 |
gtgatttttattacaataaacaaacacaaaatagatt |
33489479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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