View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_28 (Length: 233)
Name: NF2205_low_28
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 54201563 - 54201343
Alignment:
| Q |
1 |
caaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataaacatgtcgcctaatttataagctagctacttacccaagtccacaag |
100 |
Q |
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| T |
54201563 |
caaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataaacatgtcgcctaatttataagctagctacttacccaagtccacaag |
54201464 |
T |
|
| Q |
101 |
aaataggctatttggaaagcattctgcaaaagaataatgnnnnnnntatattatgagtaagttctgattgatcaagattgaactaaaatcaaagcatctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54201463 |
aaataggctatttggaaagcattctgcaaaagaataatgaaaaaaatatattatgagtaagttctgattgatcaagattgaactaaaatcaaagcatctt |
54201364 |
T |
|
| Q |
201 |
acacaatgttatgtgatatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
54201363 |
acacaatgttatgtgatatat |
54201343 |
T |
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