View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_30 (Length: 229)
Name: NF2205_low_30
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26298505 - 26298723
Alignment:
| Q |
1 |
attggctgtcatattttaatagtttttgttcccttactaactcacctcccatttattatagaaattacttttgtatacaatcatttgtaatac----att |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
26298505 |
attggctgtcatattttaatagtttttgttcccttactaactcacctcccatttattataggaattacttttgtatacaatcatttgtaatacattgatt |
26298604 |
T |
|
| Q |
97 |
gaacaaacatttcagatctcagttcaagcagttcatggtactcgaccaag-nnnnnnnngctattcatggtaaatgtgaattactgacattattcttctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||| |
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| T |
26298605 |
gaacaaacatttcagatctcagttcaagcagttcatggtactcgaccaagaaaaaaaaagttgttcatggtaaatgtgaattattgacattattcttctt |
26298704 |
T |
|
| Q |
196 |
gtattcaaactaattaaat |
214 |
Q |
| |
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||||||||||||||||||| |
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| T |
26298705 |
gtattcaaactaattaaat |
26298723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 45805867 - 45806072
Alignment:
| Q |
1 |
attggctgtcatattttaatagtttttgttcccttactaactcacctcccatttattatagaaattacttttgtatacaatcatttgtaatacattgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
45805867 |
attggctgtcatattttaatagtttttgttcccttactaactaacctcccgtgtattatagaaatcacttttgcatactatcatttgtaatacattgaac |
45805966 |
T |
|
| Q |
101 |
aaacatttcagatctcagttcaagcagttcatggtactcgaccaag-nnnnnnnngctattcatggtaaatgtgaattactgacattattcttcttgtat |
199 |
Q |
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||||||||||||||| ||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45805967 |
aaacatttcagatct---------cagttcatgttactcgaccaagaaaaaaaaagttgttcatggtaaatgtgaattactgacattattcttcttgtat |
45806057 |
T |
|
| Q |
200 |
tcaaactaattaaat |
214 |
Q |
| |
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||||||||||||||| |
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| T |
45806058 |
tcaaactaattaaat |
45806072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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