View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_5 (Length: 473)
Name: NF2205_low_5
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 174 - 465
Target Start/End: Original strand, 30896971 - 30897243
Alignment:
| Q |
174 |
gtgctacttaattaaccatttttaatttaaatgatttcgacaaggtcgaatcgatttggagcatgaaattcgaatctgcaacaatctttgacctaacatc |
273 |
Q |
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| T |
30896971 |
gtgctacttaattaaccatttttaatttaaatgatttcgacaaggtcgaatcgatttggagcatgaaattcgaatctgtaacaatctttgacctaacatc |
30897070 |
T |
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| Q |
274 |
tggctggactccctattactagtgccatgaacgnnnnnnnncttctgaaattattttttctttagaggaagttatggcaatgcatatctttccatcactc |
373 |
Q |
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| T |
30897071 |
tggctggactccctattactagggccatgaacgt-------------------ttttttctttagaggaagttatggcaatgcatatctttccatcactc |
30897151 |
T |
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| Q |
374 |
tatctcttttggatctctttctcttcaagcagtttcttttcacattttattattgaaaacagaaaatgattcatcattgctcatattttctt |
465 |
Q |
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| T |
30897152 |
tatctcttttggatctctttctcttcaagcagtttcttttcacattttattattgaaaacagaaaatgattcatcattgctcatattttctt |
30897243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 30896909 - 30896958
Alignment:
| Q |
72 |
tctttagtccgtgtaaaaatactcgagcaaaatgttatagactaagaagc |
121 |
Q |
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| T |
30896909 |
tctttagtccgtgtaaaaatactcgagcaaaatgttatagactaagaagc |
30896958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 30896831 - 30896877
Alignment:
| Q |
16 |
aaatgattcctataaatat--cagaattttatttctaacccgtacaa |
60 |
Q |
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| T |
30896831 |
aaatgattcctatatatatatcagaattttatttctaacccgtacaa |
30896877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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