View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2205_low_8 (Length: 383)
Name: NF2205_low_8
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 97 - 368
Target Start/End: Original strand, 17089994 - 17090265
Alignment:
| Q |
97 |
gctactcactgccatcactggggtcaagcacattttgacatttgtttgctggtaaatagagctagttttgtcactgcaacaaatgaaatattgtgtttga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17089994 |
gctactcactgccatcactggggtcaagcacattttgacatttgtttgctggtaaatagagctagttttgtcactgcaacaaatgaaatattgtgtttga |
17090093 |
T |
|
| Q |
197 |
aatttttcaggttttttatgatagttgataaccnnnnnnnngggagacttttgtattcgatgagaaaatatgttcgaaattgaatgtgttgcatctaatt |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17090094 |
aatttttcaggttttttatgatagttcataaccaaaaaaaagggagacttttgtattcgatgagaaaatatgtttgaaattgaatgtgttgcatctaatt |
17090193 |
T |
|
| Q |
297 |
taaaatgacattaatgctttttgttgattataaaccaccaaagagtaaactatttagatgatcatgcttcat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17090194 |
taaaatgacattaatgctttttgttgattataaaccaccaaagagtaaactatttagatgatcatgcttcat |
17090265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 17089906 - 17089966
Alignment:
| Q |
7 |
ataccgtggaaagtctagctcatagcaccaccggaaaaataagtggtaaatagagcaagca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17089906 |
ataccgtggaaagtctagctcatagcaccaccggaaaaataagtggtaaatagagcaagca |
17089966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University