View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2205_low_9 (Length: 331)
Name: NF2205_low_9
Description: NF2205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2205_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 40331194 - 40330888
Alignment:
| Q |
1 |
tgagaatacttaaaatattgtaaagtatttaacatgctaattgtgaatatctatctaagcttactgtgtaaataatttacatgactctgaaatgtaatta |
100 |
Q |
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| T |
40331194 |
tgagaatacttaaaatattgttaagtatttaacatgctaattgtgaatatctatctaagcttactgtgtaaataatttacatgactctgaaatgtaatta |
40331095 |
T |
|
| Q |
101 |
atnnnnnnngttgttggttttaatcatgaatggtgtaacatttcaacatacacgcttattaaacagcaccatttgaaaccaaattcaatcacttcataac |
200 |
Q |
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| T |
40331094 |
ataaaaaaagttgttagttttaatcatgaatggtgtaacatttcaacatacacgcttattaaacagcacca--tgaaaccaaattcaatcacttcataac |
40330997 |
T |
|
| Q |
201 |
atattttggacagtttagagtctacggtctccaaagacctttaattaacaaataaatgctaccgaaattagaaatgccaaacatcccaatacttagataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40330996 |
atattttggacagtttagagtctacggtctccaaagacctttaattaacaaata----ctaccgaaattagaaatgccaaacatcccaatacttagataa |
40330901 |
T |
|
| Q |
301 |
tacatgtataatt |
313 |
Q |
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||||||||||||| |
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| T |
40330900 |
tacatgtataatt |
40330888 |
T |
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