View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2206_high_1 (Length: 764)

Name: NF2206_high_1
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2206_high_1
NF2206_high_1
[»] chr8 (2 HSPs)
chr8 (15-753)||(25010967-25011706)
chr8 (274-313)||(4752802-4752841)


Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Original strand, 25010967 - 25011706
Alignment:
Q  15 catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25010967 catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca 25011066  T
Q  115 tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011067 tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg 25011166  T
Q  215 cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactca 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25011167 cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca 25011266  T
Q  315 tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011267 tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg 25011366  T
Q  415 tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011367 tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc 25011466  T
Q  515 tggtgaaactagtatatctg-aaacacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaa 613  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  25011467 tggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaa 25011566  T
Q  614 gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011567 gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca 25011666  T
Q  714 ctgatccagtcaacgatcctctgcctgtgtgcatcttgat 753  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25011667 ctgatccagtcaacgatcctctgcctgtgtgcatcttgat 25011706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
Q  274 aatgatcattttacaattgtcccatataggatttgaactc 313  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  4752802 aatgatcattttacaactgttccatataggatttgaactc 4752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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