View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2206_high_12 (Length: 274)
Name: NF2206_high_12
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_high_12 |
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| [»] scaffold0573 (1 HSPs) |
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| [»] scaffold0007 (4 HSPs) |
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Alignment Details
Target: scaffold0573 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 5038 - 5251
Alignment:
| Q |
2 |
ttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatcg |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038 |
ttaccgagcaacccaatggagtcatcaaatgtaattaaatcattacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatcg |
5137 |
T |
|
| Q |
102 |
atctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctta |
195 |
Q |
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||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
5138 |
atctcaaagaatcacaaaagtgaaactgtaacatcctcatattcttaaagtactgcaaaacaaaacaaaaaacaaataaatgagtgagcaagtgatctta |
5237 |
T |
|
| Q |
196 |
attaattattcaac |
209 |
Q |
| |
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|||||||||||||| |
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| T |
5238 |
attaattattcaac |
5251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 28904762 - 28904549
Alignment:
| Q |
2 |
ttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatcg |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28904762 |
ttaccgagcaacccaatggagtcatcaaatgtaattaaatcattacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatcg |
28904663 |
T |
|
| Q |
102 |
atctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctta |
195 |
Q |
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||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
28904662 |
atctcaaagaatcacaaaagtgaaactgtaacatcctcatattcttaaagtactgcaaaacaaaacaaaaaacaaataaatgagtgagcaagtgatctta |
28904563 |
T |
|
| Q |
196 |
attaattattcaac |
209 |
Q |
| |
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|||||||||||||| |
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| T |
28904562 |
attaattattcaac |
28904549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 69781 - 69575
Alignment:
| Q |
1 |
tttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | ||||||| | |||||| | ||||||||||||||||||||||| |||||||||| |
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| T |
69781 |
tttacccagcaacccaatggagtcatcaaatgtaattaattcctgacacctcctaaatgaaagttgttctaaattttggagacctgacatatcaggtatc |
69682 |
T |
|
| Q |
101 |
gatctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctt |
194 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||| | |||| |||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
69681 |
gatctcaaagaattacaatcatgaaagtgtaaaattctcagattcctgaagtactgcaaaacaaaacaaaaaacaaataagtgagtgagcgagtgatctt |
69582 |
T |
|
| Q |
195 |
aattaat |
201 |
Q |
| |
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||||||| |
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|
| T |
69581 |
aattaat |
69575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 25120 - 24914
Alignment:
| Q |
1 |
tttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatc |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| | ||||||| || |||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
25120 |
tttacccagcaaaacaatggagtcatcaaatgtaattaactccggacacctccaaaatgaaagttcttctaaattttggagacctgacatattaggtatc |
25021 |
T |
|
| Q |
101 |
gatctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctt |
194 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
25020 |
gatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaacaaaaaacaaataaatgagtgagcgagtgatctt |
24921 |
T |
|
| Q |
195 |
aattaat |
201 |
Q |
| |
|
||||||| |
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|
| T |
24920 |
aattaat |
24914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33460 - 33254
Alignment:
| Q |
1 |
tttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | ||||||| || |||||| ||||||||||||||||||||||||| || ||||||| |
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|
| T |
33460 |
tttacccagcaaaacaatggagtcatcaaatgtaattaactccggacacctccaaaatgaaagttcttctaaattttggagacctgacatattaggtatc |
33361 |
T |
|
| Q |
101 |
gatctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctt |
194 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
33360 |
gatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaacaaaaaacaaataaatgagtgagcgagtgatctt |
33261 |
T |
|
| Q |
195 |
aattaat |
201 |
Q |
| |
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||||||| |
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|
| T |
33260 |
aattaat |
33254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38209 - 38003
Alignment:
| Q |
1 |
tttacccagcaacccaatggagtcatcaaatgtaattaaaccatcacacctcaaacatgaaaaatcttctaaattttggagacctgacacatcaggtatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | ||||||| || |||||| ||||||||||||||||||||||||| || ||||||| |
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|
| T |
38209 |
tttacccagcaaaacaatggagtcatcaaatgtaattaactccggacacctccaaaatgaaagttcttctaaattttggagacctgacatattaggtatc |
38110 |
T |
|
| Q |
101 |
gatctcaaagaatcacaaaagtgaaactgtaaaattcttatattcttgaagtactgcaaaac------aaaaacaaataaatgagtgagtgagtgatctt |
194 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
38109 |
gatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaacaaaaaacaaataaatgagtgagcgagtgatctt |
38010 |
T |
|
| Q |
195 |
aattaat |
201 |
Q |
| |
|
||||||| |
|
|
| T |
38009 |
aattaat |
38003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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