View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2206_high_2 (Length: 505)
Name: NF2206_high_2
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 31613972 - 31614424
Alignment:
| Q |
19 |
tgaagagttttcttcagtagaaaatttttcaactgaaaatttgtatgttcatcacaagtcaccaattgtttcagattttgagacagaaacaaatgaaaca |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31613972 |
tgaagagttttcttcagaagaaaatttttcaactgaaaatttgtatgttcatcacaagtcaccaattgtttcagattttgagacagaaacaaatgaaaca |
31614071 |
T |
|
| Q |
119 |
gaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaaacaggaccacttctcctatcacacttaacctatacaaaagtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31614072 |
gaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaaacaggaccacttctcctatcacacttaacctatacaaaaggg |
31614171 |
T |
|
| Q |
219 |
atgacctagtagagagtgacaaaaactatgatggtattaatttcacatcatatataatttgttacatcatttacatgcatcacttatagttcaaatctta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31614172 |
atgacctagtagagagtgacaaaaactatgatggtattaatttcacatcatatataatttgttacatcattcacatgcatcacttatagttcaaatctta |
31614271 |
T |
|
| Q |
319 |
tactgagctatgtagcactgacacttcttattgaaagttgtgtctgacatgatagtaatacatgtgattatattcgattaatttatttttcaaagtatta |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31614272 |
tactgggctatgtagcactgacacttcttattgaaagttatgtctgacacgatagtaacacatgtgattatattcgattaatttatttttcaaagtatta |
31614371 |
T |
|
| Q |
419 |
tgtataaatatgtcaatttcattgttgtgtctagtgtttatgtcagtgttgtg |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31614372 |
tgtataaatatgtcaatttcattgttgtgtctagtgtttatgtcagtgttgtg |
31614424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 35871176 - 35871232
Alignment:
| Q |
363 |
tgacatgatagtaatacatgtgattatattcgattaatttatttttcaaagtattat |
419 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||| ||||||||||||| |||||| |
|
|
| T |
35871176 |
tgacatgataccaacacatgtgattacattcaattactttatttttcaaattattat |
35871232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 24445377 - 24445433
Alignment:
| Q |
363 |
tgacatgatagtaatacatgtgattatattcgattaatttatttttcaaagtattat |
419 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||| ||||||||||||| |||||| |
|
|
| T |
24445377 |
tgacatgataccaacacatgtgattacattcaattactttatttttcaaattattat |
24445433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University