View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2206_high_3 (Length: 471)
Name: NF2206_high_3
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 46467562 - 46467141
Alignment:
| Q |
16 |
atcaaggacaccaaataattatgcatgaacataattaatattcaagacaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467562 |
atcaaggacaccaaataattatgcatgaacataattaatattcaagtcaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcag |
46467463 |
T |
|
| Q |
116 |
agacaccacata-tggagaccatatgtcgcttgtcccacgcaccagtacatgatcagattcattccaccaaccatattcagctccttagtacaatcagca |
214 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467462 |
agacaccacaaaatggagaccatatgtcgcttgtcccacgcaccagtacatgatcagattcattccaccaaccatattcagctccttagtacaatcagca |
46467363 |
T |
|
| Q |
215 |
ccaaactatttcacagtcaatcaccatatgttataaaacatattcctatactccaatttgttttttagcacaattagggaacaccgatattattagttga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
46467362 |
ccaaactatttcacagtcaatcaccatatgttataaaacatattcctatactccaatttgttttttagcacaattagggaacacc---aatattagttga |
46467266 |
T |
|
| Q |
315 |
ttccaatttannnnnnngctgaatttcatgtaaaacgtactaaagtatctttctcgatatttaatgcaaaaactcatttaactatccgtgttaaatgttt |
414 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46467265 |
ttccaatttatttttttgctgaatttcatgtaaaacgtactaaagtatctttctcgatatttaatgcaaaaactcatttaactatccgcgttaaatgttt |
46467166 |
T |
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| Q |
415 |
ttctaattaaatgaaagatatatta |
439 |
Q |
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||||||||||||||||||||||||| |
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| T |
46467165 |
ttctaattaaatgaaagatatatta |
46467141 |
T |
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