View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2206_low_1 (Length: 764)

Name: NF2206_low_1
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2206_low_1
NF2206_low_1
[»] chr8 (2 HSPs)
chr8 (15-753)||(25010967-25011706)
chr8 (274-313)||(4752802-4752841)


Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Original strand, 25010967 - 25011706
Alignment:
Q  15 catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25010967 catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca 25011066  T
Q  115 tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011067 tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg 25011166  T
Q  215 cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactca 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25011167 cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca 25011266  T
Q  315 tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011267 tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg 25011366  T
Q  415 tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011367 tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc 25011466  T
Q  515 tggtgaaactagtatatctg-aaacacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaa 613  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  25011467 tggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaa 25011566  T
Q  614 gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011567 gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca 25011666  T
Q  714 ctgatccagtcaacgatcctctgcctgtgtgcatcttgat 753  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25011667 ctgatccagtcaacgatcctctgcctgtgtgcatcttgat 25011706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
Q  274 aatgatcattttacaattgtcccatataggatttgaactc 313  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  4752802 aatgatcattttacaactgttccatataggatttgaactc 4752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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