View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2206_low_10 (Length: 305)
Name: NF2206_low_10
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 186038 - 185761
Alignment:
| Q |
13 |
aatattatggtcaaagccttataagtaataaatgatgcgtatgcgattgtaccaaaataaaaatgatgcgaatgtgaaattgctaccgtttcattctaaa |
112 |
Q |
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| T |
186038 |
aatattatggtcaaagccttataagtaataaatgatgcgtatgcgattgtaccaagataaaaatgatgcgaatgtgaaattgctaccgtttcattctaaa |
185939 |
T |
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| Q |
113 |
tttgataagtcaccataagagtaagaagtatattatagatggtattttggcagtgactgaaccatctatgttataacagattaaagaaacatggtcactc |
212 |
Q |
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| T |
185938 |
tttgataagtcaccataagagtaagaagtatattatagatggtattttggcagtgactgaaccatctatgttataacagattaaagaaacatggtcactc |
185839 |
T |
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| Q |
213 |
tattttactataactctaagaaagagatggaaatttacaagttgaacctaaccacaacagttggtgttctgttggatt |
290 |
Q |
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| T |
185838 |
tattttactataactctaagaaagagatggaaatttacaagttgaacctaaccacaacagttggtgttctgttggatt |
185761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 4436993 - 4437046
Alignment:
| Q |
237 |
agatggaaatttacaagttgaacctaaccacaacagttggtgttctgttggatt |
290 |
Q |
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| T |
4436993 |
agatggaaatttacaagttcaacctaaccacaacagtttttgttctgtgggatt |
4437046 |
T |
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