View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2206_low_14 (Length: 271)
Name: NF2206_low_14
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 2594858 - 2595008
Alignment:
| Q |
17 |
atgacaccaatgtagatgattagttttgattgttagttagttagattgaataatgtgccagctgtacaaactgttgtgacagttagacttttcctaattc |
116 |
Q |
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| T |
2594858 |
atgacaccaatgtagatgattagttttgattgttagttagttagattgaataatgtgccagctgtacaaactgttgtgacagttagacttttcctaattc |
2594957 |
T |
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| Q |
117 |
ataggagattagttagatagtggattacttgcacatgaagtaaccacaaag |
167 |
Q |
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| T |
2594958 |
ataggagattagttagatagtggattacttgcacatgaagtaaccacaaag |
2595008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 2595566 - 2595659
Alignment:
| Q |
163 |
caaagagcaagttatgaaaatcatttgaaactttaacaaaaagttgttgaaaaatagtttacttcaagttgttctacattagtaggtaattatt |
256 |
Q |
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| T |
2595566 |
caaagagcaaggtatgaaaatcatttgaaactttaactcaaagttgttgaaaaatagtttacttcaagttgttttacattagtaggtaattatt |
2595659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 2640493 - 2640525
Alignment:
| Q |
224 |
cttcaagttgttctacattagtaggtaattatt |
256 |
Q |
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| T |
2640493 |
cttcaagttgttctacattagtatgtaattatt |
2640525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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