View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2206_low_4 (Length: 469)
Name: NF2206_low_4
Description: NF2206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2206_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 53902739 - 53903111
Alignment:
| Q |
1 |
agaaatgaagaaaacaatagctaaaattgtaatgattataagaatacctggactaacctttaaggtgctattgttaaaactgaaattactattattatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53902739 |
agaaatgaagaaaacaatagctaaaattgtaatgattataagaatacctggactaacctttaaggtgctattgttaaaactgaaattactattattatta |
53902838 |
T |
|
| Q |
101 |
gatcttagagtagaaactgtgataggtggaaatggtgggtgaggttgaaaataatatggtggttgttctaatggtgatggaatcctaaaggtgttgtcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53902839 |
gatcttagagtagaaactgtgataggtggaaatggtgggtgaggttgaaaataatatggtggttgttctaatggtgatggaatcataaaggtgttgtcac |
53902938 |
T |
|
| Q |
201 |
cttgaaatggctcaaaacttctacccatgttgaagggtcagagagaaacagaaaaaagattgaaactttttattgaaatgcaactagatttgattgaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53902939 |
cttgaaatggctcaaaacttctacccatgttgaagggtcagagagaaacagaaaaaagattgaaactttttattgaaatgcaactagatttgattgaaga |
53903038 |
T |
|
| Q |
301 |
cgcagaaaaatgttgaaacttttgttgaatattccatcatctagtgctaaagttttgttttttatgttggatg |
373 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53903039 |
cgcagaaaaatgtttaaacttttgttgaatattccatcatctagtgctaaagttttgttttttatgttggatg |
53903111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 53903157 - 53903196
Alignment:
| Q |
418 |
gacgatgtaaggaacaggagtttggttttggagaaatttg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53903157 |
gacgatgtaaggaacaggagtttggttttggagaaatttg |
53903196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University