View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2207_high_1 (Length: 639)
Name: NF2207_high_1
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2207_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 20 - 628
Target Start/End: Original strand, 2422048 - 2422654
Alignment:
| Q |
20 |
ggaaatacaataacaaagacatgtacaccgtaaaatatgaatgcttgtttgcaatggaaacactcattgataatgagaagtatcaaattccgagtgattg |
119 |
Q |
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| T |
2422048 |
ggaaatacaataacaaagacatgtacaccgtaaaatatgaatgcttgtttgcaatggaaacactcattgataatgagaagtatcgaattccgagtgattg |
2422147 |
T |
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| Q |
120 |
gggtaagctatgaaggttgaagataccacaaagagttaaaatattattgtggcgagttgtgaaaggtttcctttcaacaagggatatatttcaaagaaaa |
219 |
Q |
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| T |
2422148 |
gggtaagctatgaagcttgaagataccacaaagagttaaaatattattgtggcgagttgtgaaaggttgcctttcaacaagggatatatttcaaagaaaa |
2422247 |
T |
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| Q |
220 |
ggtgttcaatgtacaaatgcatgtcctttttgtgaaaatcgttatgagaatttgtttcttgaatgcgaaaaggctagtgaagtccaaactacggctgatt |
319 |
Q |
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| T |
2422248 |
ggtgttcaatgtacaaatgcatgtcctttttgtgaaaatcgttatgagaatttgtttcttgaatgcgaaaaggctagtgaagtccgaactacggctgatt |
2422347 |
T |
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| Q |
320 |
tgtggtcacaaattaattctttgatgctaaatgtctttgattttgtatccttttcttcactattttttcaaacttgcaaccatacaaaataattgataga |
419 |
Q |
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| T |
2422348 |
tgtggtcacaaattaattctttgatgctaaatgtctttgattttgtatccttttcttcactattttttcaaacttgcaaccatacaaaataattgataga |
2422447 |
T |
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| Q |
420 |
tgattataacaaacaaagcaaacaaaaataacaacaatgaagaagagtcaaagtttagtccttaagaagcaaaaatgtctatatgagtcataaacaataa |
519 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2422448 |
tgtttataacaaacaaagcaaacaaaaataacaacaatgaagaagagtcaaagtttagtccttaagaagcaaaaatgtc--tatgagtcataaacaataa |
2422545 |
T |
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| Q |
520 |
tggatagatgttaagaaacttcctttgcatggaaacgtttgcttccctatgtaatattaatggaattcatcctaaagaaaagaaagcagaaggaagatgt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2422546 |
tggatagatgttaagaaacttcctttgcatggaaacgtttgcttccctatgtaatattaatggaattcatcctaaagaaaagaaagcagaaggaagatgt |
2422645 |
T |
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| Q |
620 |
attcttcat |
628 |
Q |
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| T |
2422646 |
attcttcat |
2422654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 34407319 - 34407361
Alignment:
| Q |
217 |
aaaggtgttcaatgtacaaatgcatgtcctttttgtgaaaatc |
259 |
Q |
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| T |
34407319 |
aaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatc |
34407361 |
T |
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