View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2207_high_4 (Length: 238)

Name: NF2207_high_4
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2207_high_4
NF2207_high_4
[»] chr8 (10 HSPs)
chr8 (24-222)||(2046910-2047108)
chr8 (21-151)||(1948480-1948610)
chr8 (5-151)||(2029529-2029675)
chr8 (3-157)||(2037650-2037804)
chr8 (5-151)||(2050820-2050966)
chr8 (1-151)||(2058049-2058199)
chr8 (5-151)||(2055229-2055375)
chr8 (1-151)||(10768549-10768699)
chr8 (5-151)||(2034088-2034234)
chr8 (35-85)||(1094256-1094306)
[»] chr4 (1 HSPs)
chr4 (5-156)||(48906771-48906922)
[»] chr1 (5 HSPs)
chr1 (70-151)||(17183303-17183384)
chr1 (27-91)||(16439240-16439304)
chr1 (27-70)||(16425974-16426017)
chr1 (27-70)||(16442252-16442295)
chr1 (35-146)||(33771236-33771347)
[»] chr2 (2 HSPs)
chr2 (2-149)||(28735273-28735420)
chr2 (3-70)||(28742434-28742501)
[»] chr7 (1 HSPs)
chr7 (35-85)||(29463893-29463943)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 2046910 - 2047108
Alignment:
Q  24 ttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaa 123  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2046910 ttctgacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaa 2047009  T
Q  124 tgttggtgatcttttgcaggtaagttttgtgtgtatattttcagaaattgttagtaattatgtaccatactgaaaagagaaaaacaaaaatcaacatag 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2047010 tgttggtgatcttctgcaggtaagttttgtgtgtatattttcagaaattgttagtaattatgtaccatactgaaaagagaaaaacaaaaatcaacatag 2047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 1948610 - 1948480
Alignment:
Q  21 gttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagt 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||    
T  1948610 gttttctcacagtgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgcaactggagctctcatagt 1948511  T
Q  121 taatgttggtgatcttttgcaggtaagtttt 151  Q
    |||| |||||||||||||||||| |||||||    
T  1948510 taatattggtgatcttttgcaggcaagtttt 1948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 2029529 - 2029675
Alignment:
Q  5 aagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtac 104  Q
    ||||||| ||||| || ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  2029529 aagcattgtgacaatgatttcctcacagtgcttctccaagaccatattggtggcctccaagttctttatgaagataaatggattgatataacacctgtac 2029628  T
Q  105 ctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  2029629 ctggagctctcgtagttaatgttggtgatcttttgcaggcaagtttt 2029675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 2037650 - 2037804
Alignment:
Q  3 ccaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgt 102  Q
    |||||||||| |||  ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2037650 ccaagcattcagaccatggttttctcacagtgcttatccaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgt 2037749  T
Q  103 acctggatctctcatagttaatgttggtgatcttttgcaggtaagttttgtgtgt 157  Q
    | ||||| |||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  2037750 atctggagctctcatagttaatattggtgatcttctgcaggcaagttttctgtgt 2037804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 2050820 - 2050966
Alignment:
Q  5 aagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtac 104  Q
    ||||||||||| | || ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  2050820 aagcattctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgaagataaatggattgatataacacctgtat 2050919  T
Q  105 ctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  2050920 ctggagctctcatagttaatgttggtgatcttttgcaggcaagtttt 2050966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 2058049 - 2058199
Alignment:
Q  1 aaccaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacct 100  Q
    ||||||||||||||| | || ||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  2058049 aaccaagcattctgataatgatttcctgacaatgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacct 2058148  T
Q  101 gtacctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||||||| ||||| |||||||||||||||||||| | |||| |||||||    
T  2058149 gtacctggagctctcctagttaatgttggtgatcttcttcaggcaagtttt 2058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 2055229 - 2055375
Alignment:
Q  5 aagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtac 104  Q
    ||||||||||| | || ||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||     
T  2055229 aagcattctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgacgataaatggattgatataacacctgtat 2055328  T
Q  105 ctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||||    
T  2055329 ctggagctctaatagttaatgttggtgatcttttgcaggcaagtttt 2055375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 10768549 - 10768699
Alignment:
Q  1 aaccaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacct 100  Q
    ||||||||||||||| | || ||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||| | |||||||||||||||||  |||||    
T  10768549 aaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtggcctccaagttctttatcaggataaatggattgatattacacct 10768648  T
Q  101 gtacctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    || |||||  ||||||||||||||||||| ||||||||||||| |||||||    
T  10768649 gttcctggggctctcatagttaatgttggagatcttttgcaggcaagtttt 10768699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 2034088 - 2034234
Alignment:
Q  5 aagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtac 104  Q
    ||||||||||| | || ||| |||||||||||||||||||||||| | |||||||| |||||||| ||||| || ||||||||||||||| |||||||||    
T  2034088 aagcattctgataatgatttcctcacagtgcttctacaagaccatgttggtggtcttcaagttctgtatgacgacaaatggattgatataacacctgtac 2034187  T
Q  105 ctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||| ||||||| ||| |||| ||||||||| |||||| |||||||    
T  2034188 ctggagctctcattgttgatgtcggtgatcttctgcaggcaagtttt 2034234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 1094256 - 1094306
Alignment:
Q  35 cttctacaagaccatataggtggtctccaagttctttatgaagataaatgg 85  Q
    ||||||||||||||  | |||||||| ||||||||| ||||||||||||||    
T  1094256 cttctacaagaccaacttggtggtctacaagttcttcatgaagataaatgg 1094306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 48906922 - 48906771
Alignment:
Q  5 aagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtac 104  Q
    ||||||||||||| |||||| ||  | ||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| |   |||| |||    
T  48906922 aagcattctgacactggtttccttgcggtggttctccaagaccatattggtggcctccaagttctttatcaagataaatgggttgatgtgaaacctatac 48906823  T
Q  105 ctggatctctcatagttaatgttggtgatcttttgcaggtaagttttgtgtg 156  Q
     ||| |||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  48906822 atgggtctctcgtagttaatgttggtgaccttttgcaggcaagttttttgtg 48906771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 17183384 - 17183303
Alignment:
Q  70 ttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatcttttgcaggtaagtttt 151  Q
    ||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  17183384 ttatgaaaataaatggattaatataacacctgtaactggagctctcatagttaatgttggcgatcttttgcaggcaagtttt 17183303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 16439240 - 16439304
Alignment:
Q  27 tcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgat 91  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| || ||||||  |||||||||    
T  16439240 tcacggtgcttctacaagatcatacaggtggtctccaagttcttcataaagatatgtggattgat 16439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 16426017 - 16425974
Alignment:
Q  27 tcacagtgcttctacaagaccatataggtggtctccaagttctt 70  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  16426017 tcacagtgcttctacaagatcatataggtggcctccaagttctt 16425974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 16442295 - 16442252
Alignment:
Q  27 tcacagtgcttctacaagaccatataggtggtctccaagttctt 70  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  16442295 tcacagtgcttctacaagatcatataggtggcctccaagttctt 16442252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 33771347 - 33771236
Alignment:
Q  35 cttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatc 134  Q
    ||||||||||||| ||| || ||||| ||||||||| || || || ||||||||||| |  | || || | ||||||||| ||||| ||| |||||||||    
T  33771347 cttctacaagaccgtattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccggtgcatggatctcttatagtaaatattggtgatc 33771248  T
Q  135 ttttgcaggtaa 146  Q
    || |||||||||    
T  33771247 ttctgcaggtaa 33771236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 28735420 - 28735273
Alignment:
Q  2 accaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctg 101  Q
    ||||| ||||||||  || ||||||||||||||||||| ||||||||||| |||||||| |||||||||||  |||| || ||||| ||| || |||| |    
T  28735420 accaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtggtcttcaagttctttaccaagaaaagtggatcgatgtaccaccgg 28735321  T
Q  102 tacctggatctctcatagttaatgttggtgatcttttgcaggtaagtt 149  Q
    |||| |   ||||  | |||||| ||||||||||| |||||| |||||    
T  28735320 tacccgaggctcttgttgttaatattggtgatcttctgcaggcaagtt 28735273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 28742501 - 28742434
Alignment:
Q  3 ccaagcattctgacagtggttttctcacagtgcttctacaagaccatataggtggtctccaagttctt 70  Q
    |||| |||||||| ||| |||| |||||||||||||| ||||||||||| ||||| || |||||||||    
T  28742501 ccaaacattctgatagtagtttcctcacagtgcttcttcaagaccatattggtggccttcaagttctt 28742434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 29463893 - 29463943
Alignment:
Q  35 cttctacaagaccatataggtggtctccaagttctttatgaagataaatgg 85  Q
    ||||||||||||||  | |||||||| ||||||||| ||||||||||||||    
T  29463893 cttctacaagaccaacttggtggtcttcaagttcttcatgaagataaatgg 29463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University