View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2207_low_11 (Length: 209)

Name: NF2207_low_11
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2207_low_11
NF2207_low_11
[»] chr2 (35 HSPs)
chr2 (1-201)||(12006395-12006595)
chr2 (1-136)||(11987764-11987899)
chr2 (1-139)||(12012826-12012964)
chr2 (1-201)||(12019165-12019388)
chr2 (4-103)||(9328363-9328461)
chr2 (5-89)||(9274277-9274361)
chr2 (1-95)||(7115946-7116040)
chr2 (1-102)||(9284467-9284569)
chr2 (1-90)||(9315795-9315884)
chr2 (1-90)||(9320758-9320847)
chr2 (4-102)||(9294920-9295019)
chr2 (1-102)||(9291686-9291787)
chr2 (149-201)||(9291566-9291618)
chr2 (149-201)||(12012999-12013051)
chr2 (1-74)||(10347553-10347626)
chr2 (1-97)||(10352878-10352974)
chr2 (149-201)||(11987937-11987989)
chr2 (151-201)||(9364245-9364295)
chr2 (1-74)||(8573803-8573876)
chr2 (149-201)||(9315647-9315699)
chr2 (149-201)||(9320599-9320651)
chr2 (149-191)||(9274200-9274242)
chr2 (4-90)||(9061439-9061522)
chr2 (2-74)||(10341141-10341213)
chr2 (149-201)||(10352738-10352790)
chr2 (1-52)||(9065891-9065942)
chr2 (149-201)||(9066083-9066135)
chr2 (1-73)||(10335649-10335721)
chr2 (162-193)||(8573993-8574024)
chr2 (1-52)||(9364442-9364493)
chr2 (149-195)||(9284657-9284703)
chr2 (149-186)||(9295107-9295144)
chr2 (149-190)||(10341038-10341079)
chr2 (1-74)||(10371626-10371702)
chr2 (149-201)||(19393261-19393318)
[»] scaffold0667 (2 HSPs)
scaffold0667 (1-90)||(4229-4318)
scaffold0667 (149-201)||(4073-4125)
[»] chr1 (6 HSPs)
chr1 (149-202)||(29453747-29453800)
chr1 (150-201)||(29443774-29443825)
chr1 (149-201)||(29422941-29422993)
chr1 (102-139)||(29443693-29443730)
chr1 (149-184)||(29468238-29468273)
chr1 (1-34)||(29468057-29468090)
[»] chr3 (2 HSPs)
chr3 (149-201)||(37462098-37462150)
chr3 (1-93)||(37462238-37462330)
[»] chr8 (2 HSPs)
chr8 (1-44)||(41966985-41967028)
chr8 (149-201)||(41967184-41967236)
[»] chr4 (1 HSPs)
chr4 (149-200)||(26574525-26574576)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12006395 - 12006595
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 100  Q
    ||||||||||||||||||||  || |||||||||||||| |||| || |||||||| ||||| | ||||||||| |||||||||||||||||||||||||    
T  12006395 ttgtgttggaagtcttgtactgccttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaagagaaggtacttcttattgatt 12006494  T
Q  101 atgtataaattaatatcaattcaatggacccatcatatgttaatgtatttgaattcttattataggacaaggattctctaattactttgaagtctctacc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12006495 atgtataagttaatatcaattcaatggacccatcatatgttaatgtatttgaattcttattttaggacaaggattctctaattactttgaagtctctacc 12006594  T
Q  201 t 201  Q
    |    
T  12006595 t 12006595  T

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Target: chr2; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11987764 - 11987899
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11987764 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 11987863  T
Q  101 atgtataaattaatatcaattcaatggacccatcat 136  Q
    |||||||| |||||||||||||||||||||||||||    
T  11987864 atgtataagttaatatcaattcaatggacccatcat 11987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 12012826 - 12012964
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12012826 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggtacttcttattgatt 12012925  T
Q  101 atgtataaattaatatcaattcaatggacccatcatatg 139  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  12012926 atgtataagttaatatcaattcaatggacccatcatatg 12012964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12019165 - 12019388
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 100  Q
    |||||||||||||||||||||||| ||||| |||| |||| ||  |   | ||||| ||||| | |||| |||| |||||||||||||||||||||||||    
T  12019165 ttgtgttggaagtcttgtaccaccttccttacctgctgatgataatcatacgaaggagaatcgtacaagaaagagcaagagaaggtacttcttattgatt 12019264  T
Q  101 atgtataaattaatatc-aattcaatggacccatcatat----------------------gttaatgtatttgaattcttattataggacaaggattct 177  Q
    |||||||| |||| ||| |||||||||||||||||||||                      ||||||||||| |||||||||||||||||||||||||||    
T  12019265 atgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactctatgttaatgtattggaattcttattataggacaaggattct 12019364  T
Q  178 ctaattactttgaagtctctacct 201  Q
    ||||||||||||||||||||||||    
T  12019365 ctaattactttgaagtctctacct 12019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 9328461 - 9328363
Alignment:
Q  4 tgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatg 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||| |||||||||    
T  9328461 tgttggaagtcttgtaccaccttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaaggtacttctt-ttgattatg 9328363  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 9274361 - 9274277
Alignment:
Q  5 gttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtact 89  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||    
T  9274361 gttggaagttttgtaccaccctccttccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7115946 - 7116040
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttat 95  Q
    |||| ||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7115946 ttgttttgaaagccttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagcaagagcaagagaaggtacttcttat 7116040  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9284467 - 9284569
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattgat 99  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| ||||||||    
T  9284467 ttgtgttgaaagtcttgtgccaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgat 9284566  T
Q  100 tat 102  Q
    |||    
T  9284567 tat 9284569  T

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Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9315884 - 9315795
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 90  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||||    
T  9315884 ttgtgttgaaagtcttgtaccaccttccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtactt 9315795  T

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Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9320847 - 9320758
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 90  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||||||    
T  9320847 ttgtgttggaagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtactt 9320758  T

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Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 9294920 - 9295019
Alignment:
Q  4 tgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattgattat 102  Q
    ||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||||||    
T  9294920 tgttgaaagtctcgtagcaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgattat 9295019  T

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Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 9291787 - 9291686
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 100  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||| | | |||||  |||| | |||||||||||||||||    
T  9291787 ttgtgttgaaagtcttctaccaccttccttccctgttgataattgtaggaagaaggagaatcatacgaacaagagaaagaaacggtacttcttattgatt 9291688  T
Q  101 at 102  Q
    ||    
T  9291687 at 9291686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9291618 - 9291566
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291618 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 9291566  T

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Target: chr2; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 12012999 - 12013051
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012999 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 12013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10347626 - 10347553
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 74  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  10347626 ttgtgttggaagtcttgtcccaccttccttccctgttgataatcgtaggaagaaggagaatcatccaagcaaga 10347553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10352974 - 10352878
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattg 97  Q
    |||||||||||||||||||||||| | ||||||||||||||||  ||||||| ||| ||||| | ||||| ||| | ||| ||||||||||||||||    
T  10352974 ttgtgttggaagtcttgtaccaccttacttccctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggtacttcttattg 10352878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 11987937 - 11987989
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  11987937 ttgaattcctattataggacaaggattttctaattactttgaagtctctacct 11987989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 9364295 - 9364245
Alignment:
Q  151 gaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  9364295 gaattcttattataggacaaggagtctctaattactttgaagtctatacct 9364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8573803 - 8573876
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 74  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||| ||||  | |||||||||    
T  8573803 ttgtgttggaagtcttgtaccacctttcttccctgttgataattgtaggaaggaggagaattgtacaagcaaga 8573876  T

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Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9315699 - 9315647
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  9315699 ttgaattcttattataggacaaggattccctaattactttaaattctctacct 9315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9320651 - 9320599
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  9320651 ttgaatttttattatcggacaaggatactctaattactttgaagtctctacct 9320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 9274242 - 9274200
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaa 191  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9274242 ttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 9061439 - 9061522
Alignment:
Q  4 tgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 90  Q
    |||||||||||| ||| |||| | |||||||||||||| || ||   |||||| ||||| | |||||||||||||||||||||||||    
T  9061439 tgttggaagtctcgtatcacctttcttccctgttgatacttgta---agaaggagaatcgtacaagcaagaccaagagaaggtactt 9061522  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10341213 - 10341141
Alignment:
Q  2 tgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 74  Q
    |||||||||||| | |||||||| | |||||||||||| |||  ||||||||||| ||||| |||||||||||    
T  10341213 tgtgttggaagtatagtaccacctttcttccctgttgacaatcgtaggaagaaggagaatccttcaagcaaga 10341141  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 10352790 - 10352738
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| |||||    
T  10352790 ttgaattcttatcataggataaggattctctaattactttgacgtctttacct 10352738  T

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Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9065891 - 9065942
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaag 52  Q
    |||||||| ||||||||||||| | ||||||||||||||||||| |||||||    
T  9065891 ttgtgttgaaagtcttgtaccaacttccttccctgttgataattgtaggaag 9065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 9066083 - 9066135
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||| |||||| |||||| || |||||||||||||||||||||| |||||||    
T  9066083 ttgaagtcttatcataggataaagattctctaattactttgaagtttctacct 9066135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10335721 - 10335649
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaag 73  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||  ||||||||||  ||||| | ||||||||    
T  10335721 ttgtgttggaagtcttgtttcaccttccttacctgttgataatcgtaggaagaagcagaatcgtacaagcaag 10335649  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 8573993 - 8574024
Alignment:
Q  162 ataggacaaggattctctaattactttgaagt 193  Q
    ||||||||||||||||||||||||||||||||    
T  8573993 ataggacaaggattctctaattactttgaagt 8574024  T

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Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9364493 - 9364442
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaag 52  Q
    ||||||||| |||||||||||||| || || ||||||||||||| |||||||    
T  9364493 ttgtgttggtagtcttgtaccaccttctttacctgttgataattgtaggaag 9364442  T

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Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 9284657 - 9284703
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtct 195  Q
    ||||||||||||||| ||||||||| |||| ||||||||||| ||||    
T  9284657 ttgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

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Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 9295107 - 9295144
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattact 186  Q
    ||||||||||||||||||||| || |||||||||||||    
T  9295107 ttgaattcttattataggacaggggttctctaattact 9295144  T

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Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 10341079 - 10341038
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttga 190  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  10341079 ttgaattcttatcataggataaggattctctaattaccttga 10341038  T

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Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10371702 - 10371626
Alignment:
Q  1 ttgtgttggaagtcttgtaccacc--ctccttccct-gttgataattctaggaagaaggggaatcattcaagcaaga 74  Q
    ||||||||| ||||||||||||||  | |||| ||| |||||||||  ||||||||||| ||||||| |||||||||    
T  10371702 ttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaaga 10371626  T

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Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 19393261 - 19393318
Alignment:
Q  149 ttgaattcttattataggacaaggatt-----ctctaattactttgaagtctctacct 201  Q
    ||||||||||||||||||| |||||||     ||||||||||||||||||||| ||||    
T  19393261 ttgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacct 19393318  T

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Target: scaffold0667 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4318 - 4229
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 90  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||| || |||||| ||||| |||||||||    
T  4318 ttgtgttggaagtcttgtaccaccttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggtactt 4229  T

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Target: scaffold0667; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 4125 - 4073
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  4125 ttgaattcttattataggaaaaggattctataattactttgaattctctacct 4073  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 29453747 - 29453800
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctaccta 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29453747 ttgaattcttattatagaacaaggattctctaattactttgaagtctctaccta 29453800  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 29443774 - 29443825
Alignment:
Q  150 tgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  29443774 tgaattcttatcataggacaaggattctctaattattttgaagtctctacct 29443825  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 29422993 - 29422941
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  29422993 ttgaattcttattatatgacaatgattctctaattattttgaagtctctacct 29422941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 29443693 - 29443730
Alignment:
Q  102 tgtataaattaatatcaattcaatggacccatcatatg 139  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29443693 tgtataagttaatatcaattcaatggacccatcatatg 29443730  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 29468238 - 29468273
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaatta 184  Q
    |||||||||||||||||||||| |||||||||||||    
T  29468238 ttgaattcttattataggacaatgattctctaatta 29468273  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29468057 - 29468090
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29468057 ttgtgttggaagtcttgtaccaccttccttccct 29468090  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 37462150 - 37462098
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37462150 ttgaattcttgttataggacaaggattctctaattactttgaagtctctacct 37462098  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37462330 - 37462238
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttctt 93  Q
    |||||||| |||||||||| ||||  | |||||||||||||||| ||||||||||| | |     ||||||||| |||||||||||| |||||    
T  37462330 ttgtgttgaaagtcttgtatcacctcctttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggtatttctt 37462238  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41966985 - 41967028
Alignment:
Q  1 ttgtgttggaagtcttgtaccaccctccttccctgttgataatt 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  41966985 ttgtgttggaagtcttgtaccaccttccttccctgttgttaatt 41967028  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 41967184 - 41967236
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 201  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||| || |||||    
T  41967184 ttgaattcttattataggataactattctctaattacttcgaaggctttacct 41967236  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 26574576 - 26574525
Alignment:
Q  149 ttgaattcttattataggacaaggattctctaattactttgaagtctctacc 200  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| ||||    
T  26574576 ttgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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