View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2207_low_3 (Length: 478)
Name: NF2207_low_3
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2207_low_3 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 106 - 461
Target Start/End: Original strand, 32254006 - 32254364
Alignment:
| Q |
106 |
gcttgttgtagagaacaaaaaagaatggaaattcgaagttgatccaaacctgccgatgatggttcgcatggctaacctatgtgttgttggtggtttttct |
205 |
Q |
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| T |
32254006 |
gcttgttgtagagaacaaaaaagaatggaaattcgaagttgatccaaacctgccgatgatggttcgcatggctaacctatgtgttgttggtggtttttct |
32254105 |
T |
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| Q |
206 |
gtgaatggagtagctgagattcacagtgagattgtaaaagaggaagtttttaatgaattttacgaggtatcaaaatcaacagattctttttatgttaata |
305 |
Q |
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| T |
32254106 |
gtgaatggagtagctgagattcacagtgagattgtaaaagaggaagtttttaatgaattttacgaggtatcaaaatcaacagattctttttatgttaata |
32254205 |
T |
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| Q |
306 |
tgaacaa---nnnnnnngcaattagtggtatgtacatccataaaatatgatattcattaattttctctgtcattgaattgacagttgtggcctgaaaaat |
402 |
Q |
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| T |
32254206 |
tgaactaatttttttttgcaattagtggtatgtacatccataaaatatgatattcattaattttctctgtcattgaattgacagttgtggcctgaaaaat |
32254305 |
T |
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| Q |
403 |
tccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcccgac |
461 |
Q |
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| T |
32254306 |
tccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcccgac |
32254364 |
T |
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Target: scaffold0288 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 11004 - 10931
Alignment:
| Q |
384 |
cagttgtggcctgaaaaattccagaataaaacaaatggggtgacacctagaagatggatccgtttctgtaatcc |
457 |
Q |
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| T |
11004 |
cagttgtggcctgagaaattccaaaacaaaacaaatggtgtgacaccaaggagatggatcaggttctgtaatcc |
10931 |
T |
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