View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2207_low_4 (Length: 425)
Name: NF2207_low_4
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2207_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 37600502 - 37600094
Alignment:
| Q |
18 |
tgttgcaccataaattaaactcaaattcttttaaacgatttgtcctttagtgaacacattaaccacttgagtttaattatttatttagagtcaacaaaat |
117 |
Q |
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| T |
37600502 |
tgttgcaccataaattaaactcgaattctttcaaacgatttatcttttagtgaacacattaaccacttgagtccaattatttatttagagtcaacaaaat |
37600403 |
T |
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| Q |
118 |
tttatttcgatcactcctgcatggagtaattgacatcaaagataacaactagccaa------ccccgatgaggaactctttgatttgagagtttagtttg |
211 |
Q |
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| T |
37600402 |
tttatttcggtcagtcctgcacagagtaatagacatcaaagataacaactagccaagaaaatccccgatgagggactctttgatttgagagtttagtttg |
37600303 |
T |
|
| Q |
212 |
attaggtgagtagatatatgattttaggtgagcaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttct |
311 |
Q |
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| T |
37600302 |
attaggtgagtagatatatgattttaggtgagtaaacagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttct |
37600203 |
T |
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| Q |
312 |
ctcctgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttctt |
411 |
Q |
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| T |
37600202 |
ctcttgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccatttcatttgtataaattgacactacaaatattttctt |
37600103 |
T |
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| Q |
412 |
catctcact |
420 |
Q |
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| T |
37600102 |
catctcact |
37600094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 37606516 - 37606415
Alignment:
| Q |
310 |
ctctcctgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttc |
409 |
Q |
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| T |
37606516 |
ctctcttgcatacccacatatagatccttctccaaagatatatgatttcttgctaccaatctccattgcatttgtataaattgatactacaaatattttc |
37606417 |
T |
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| Q |
410 |
tt |
411 |
Q |
| |
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|| |
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| T |
37606416 |
tt |
37606415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 34751057 - 34750991
Alignment:
| Q |
328 |
taaagatccttttcc-aaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattga |
393 |
Q |
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| T |
34751057 |
taaagatccttttcccaaagatatatgatttcttgctaccaatctccatagcatttgtataaattga |
34750991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 3678483 - 3678451
Alignment:
| Q |
29 |
aaattaaactcaaattcttttaaacgatttgtc |
61 |
Q |
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| T |
3678483 |
aaatcaaactcaaattcttttaaacgatttgtc |
3678451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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