View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2207_low_5 (Length: 272)
Name: NF2207_low_5
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2207_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23035267 - 23035503
Alignment:
| Q |
1 |
gatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgt |
100 |
Q |
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| T |
23035267 |
gatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgt |
23035366 |
T |
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| Q |
101 |
tcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttccttttactt-agaataatgaattttcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
23035367 |
tcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttccttttacttaagaatgatgaattttcat |
23035466 |
T |
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| Q |
200 |
attgataataaaatttgagtatgagaaaagatgatag |
236 |
Q |
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| T |
23035467 |
attgataataaaatttgagtatgagaaaagatgatag |
23035503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 23026463 - 23026634
Alignment:
| Q |
1 |
gatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgt |
100 |
Q |
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| T |
23026463 |
gatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgt |
23026562 |
T |
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| Q |
101 |
tcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttc |
172 |
Q |
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| T |
23026563 |
tcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttc |
23026634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 23057799 - 23057917
Alignment:
| Q |
10 |
actacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttctt |
109 |
Q |
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|||||| ||||||||||||||| ||||||||||||| | |||||||| ||| | || ||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
23057799 |
actacaatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatctt |
23057898 |
T |
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| Q |
110 |
ccgttgcaggtttaaaagc |
128 |
Q |
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| T |
23057899 |
ctgttggaggtttaaaagc |
23057917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 23091969 - 23092048
Alignment:
| Q |
19 |
ggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagt |
98 |
Q |
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| T |
23091969 |
ggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagt |
23092048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 23081053 - 23081147
Alignment:
| Q |
1 |
gatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcat |
95 |
Q |
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||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
23081053 |
gatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcat |
23081147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 23069175 - 23069232
Alignment:
| Q |
38 |
gttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcat |
95 |
Q |
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| T |
23069175 |
gttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgggagcat |
23069232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 30790306 - 30790384
Alignment:
| Q |
42 |
ccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggt |
120 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||| || ||||||||| |
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| T |
30790306 |
ccatctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttgcaggt |
30790384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 30706279 - 30706202
Alignment:
| Q |
40 |
taccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgca |
117 |
Q |
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| T |
30706279 |
taccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgca |
30706202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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