View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2207_low_8 (Length: 225)
Name: NF2207_low_8
Description: NF2207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2207_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 23026309 - 23026189
Alignment:
| Q |
96 |
aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcacatactgat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23026309 |
aatggatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaatagtatatcacatactgat |
23026210 |
T |
|
| Q |
196 |
cctgttacattaaaccctttg |
216 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23026209 |
cctgttacattaaaccctttg |
23026189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 23035117 - 23034997
Alignment:
| Q |
96 |
aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcacatactgat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23035117 |
aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattaatcttttgcgttgttcatgaaataatatatcacatactgat |
23035018 |
T |
|
| Q |
196 |
cctgttacattaaaccctttg |
216 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23035017 |
cctgttacattaaaccctttg |
23034997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 23091462 - 23091379
Alignment:
| Q |
105 |
tactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcaca |
188 |
Q |
| |
|
||||||||||||||| ||||| |||||| | |||| |||||||||||| | ||| | ||||||||| ||||||||| |||||| |
|
|
| T |
23091462 |
tactagaatattgagttttccttgaaaggttgaagcaacagtttccatcaatttttcacgttgttcacgaaataataaatcaca |
23091379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 23056710 - 23056655
Alignment:
| Q |
100 |
gatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattag |
155 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||| |||| |||| |||||||||| |
|
|
| T |
23056710 |
gatcttactagaatattgagttttccttgaaagattgaagcaacattttccattag |
23056655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 23063912 - 23063829
Alignment:
| Q |
105 |
tactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcaca |
188 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| ||| |||||||| | || | ||||| ||||||||||||| |||||| |
|
|
| T |
23063912 |
tactagaatattgagttttccatcaaagatcgaagcaacggtttccatcaacttttgacgttggtcatgaaataataaatcaca |
23063829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University