View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2208_high_1 (Length: 518)

Name: NF2208_high_1
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2208_high_1
NF2208_high_1
[»] chr2 (8 HSPs)
chr2 (182-502)||(4666283-4666597)
chr2 (1-100)||(4666102-4666201)
chr2 (324-431)||(4662818-4662925)
chr2 (324-486)||(4644691-4644853)
chr2 (455-508)||(4663113-4663166)
chr2 (185-221)||(43100462-43100498)
chr2 (182-248)||(15803320-15803386)
chr2 (186-223)||(11522074-11522111)
[»] chr6 (4 HSPs)
chr6 (182-251)||(33184314-33184383)
chr6 (182-223)||(2502216-2502257)
chr6 (197-226)||(26683479-26683508)
chr6 (197-225)||(20381760-20381788)
[»] chr1 (6 HSPs)
chr1 (182-223)||(6538135-6538176)
chr1 (182-248)||(35619381-35619447)
chr1 (182-223)||(50097762-50097803)
chr1 (182-223)||(5883496-5883537)
chr1 (182-223)||(25561210-25561251)
chr1 (186-223)||(49102867-49102904)
[»] chr7 (6 HSPs)
chr7 (182-248)||(48775967-48776033)
chr7 (188-227)||(43230129-43230168)
chr7 (182-223)||(22556596-22556637)
chr7 (182-226)||(38679879-38679923)
chr7 (182-226)||(44487224-44487268)
chr7 (182-226)||(46611772-46611816)
[»] chr8 (3 HSPs)
chr8 (182-223)||(1839712-1839753)
chr8 (185-223)||(13258637-13258675)
chr8 (206-246)||(6447578-6447618)
[»] chr5 (2 HSPs)
chr5 (182-223)||(3936472-3936513)
chr5 (182-223)||(15917540-15917581)
[»] chr4 (9 HSPs)
chr4 (182-223)||(27143368-27143409)
chr4 (183-222)||(13984867-13984905)
chr4 (182-248)||(28880139-28880205)
chr4 (185-223)||(45022429-45022467)
chr4 (182-223)||(18397061-18397102)
chr4 (196-225)||(21443184-21443213)
chr4 (185-246)||(38644637-38644698)
chr4 (183-223)||(18399750-18399790)
chr4 (182-226)||(31418845-31418889)
[»] chr3 (1 HSPs)
chr3 (185-223)||(46891537-46891575)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 182 - 502
Target Start/End: Original strand, 4666283 - 4666597
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctctcccgacaaagtctttcattcctctccactcta 281  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||   |||||||||||||||||| | |||||    
T  4666283 cactctctaataaaatactctttcaaaaaatatgaaagattcatcagttctctcttatatttttctctccc---aaagtctttcattcctcttccctcta 4666379  T
Q  282 aatccctatacagagcccaagggtttgatgccatggaaatacttaaagtttgttgtggaggtggaagtcttgaaaattacaatgatacggcactatgtgg 381  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4666380 aatccctagacaaagcccaagggtttgatgccacggaaatacttaaagtttgttgtggaggtggaagtcttgaaaattacaatgatacggcactatgtgg 4666479  T
Q  382 aaatacaggtgattattgcatgggatattcttcaaaatatgtcagctgggatggatattatttaactgaggttgcatatagatgaatgaccaagggttta 481  Q
    |||||||||||   |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4666480 aaatacaggtg---attgcatgtgatatccttcaaaatatgtcagttgggatggatattatataactgaggttgcatatagatgaatgaccaagggttta 4666576  T
Q  482 ttagatgtaccccacaccatt 502  Q
    ||||||| |||||||||||||    
T  4666577 ttagatggaccccacaccatt 4666597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4666102 - 4666201
Alignment:
Q  1 aatgaaaatcaaaaagctgacaaaatttgccaagaaaaatgaggtagctactattaaaaccctcctcatttggggaattaaaggagggttttgaaaggtt 100  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||| ||||||    
T  4666102 aatgaaaataaaaaagctaacaaaatttgccaagaaaaatgaggtagctactattaaaatcctcctcatttggggaactaaagaaggattttggaaggtt 4666201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 431
Target Start/End: Original strand, 4662818 - 4662925
Alignment:
Q  324 ttaaagtttgttgtggaggtggaagtcttgaaaattacaatgatacggcactatgtggaa-atacaggtgattattgcatgggat-attcttcaaaatat 421  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || | | |||||||  ||||||| ||| || |||||||||||    
T  4662818 ttaaagtttgttgtggagatggaagtcttgaaaattgcaatgatacggcactatgtgaaacacataggtgat--ttgcatgtgatgatccttcaaaatat 4662915  T
Q  422 gtcagctggg 431  Q
    ||||||||||    
T  4662916 gtcagctggg 4662925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 486
Target Start/End: Original strand, 4644691 - 4644853
Alignment:
Q  324 ttaaagtttgttgtggaggtggaagtcttgaaaattacaatgatacggcactatgtggaaatacaggtgattattgcatgggat-attcttcaaaatatg 422  Q
    ||||||||||||||||||||||| | | | | |||||||||||| | ||||||||||||||  |||  | | |||||||| ||| || ||||||||||||    
T  4644691 ttaaagtttgttgtggaggtggaggcccttacaattacaatgattcagcactatgtggaaactcagaag-tgattgcatgtgatgatccttcaaaatatg 4644789  T
Q  423 tcagctgggatggatattatttaactgaggttgcatatagatgaatgaccaagggtttattaga 486  Q
    | ||||||||||||||| || | ||||||| |||| ||||||| |||||  ||| |||||||||    
T  4644790 ttagctgggatggatatcatcttactgaggctgcacatagatggatgactgaggctttattaga 4644853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 508
Target Start/End: Original strand, 4663113 - 4663166
Alignment:
Q  455 gcatatagatgaatgaccaagggtttattagatgtaccccacaccattcctatg 508  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  4663113 gcatatagatgaatgaccaggggtttattagatggacaccacaccattcctatg 4663166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 43100498 - 43100462
Alignment:
Q  185 tctctaataaaatactctttcaaaaaatatgaaagat 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  43100498 tctctaataaaatactctttcaaaaaatatgaaagat 43100462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 15803320 - 15803386
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctc 248  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||  || || | ||||||||||||    
T  15803320 cactctctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattttcccctatatttctctc 15803386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 11522111 - 11522074
Alignment:
Q  186 ctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  11522111 ctctaaaaaaatactctttcaaaaaatgtgaaagattt 11522074  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 33184314 - 33184383
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctctcc 251  Q
    |||||||||| ||||||||||||||||||||||||||||||| |   || || |||||||||||||||||    
T  33184314 cactctctaaaaaaatactctttcaaaaaatatgaaagatttcttaattttcccttatatttctctctcc 33184383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 2502257 - 2502216
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  2502257 cactctctaagaaaatactctttcaaaaaatgtgaaagattt 2502216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 26683479 - 26683508
Alignment:
Q  197 tactctttcaaaaaatatgaaagatttatc 226  Q
    ||||||||||||||||||||||||||||||    
T  26683479 tactctttcaaaaaatatgaaagatttatc 26683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 20381788 - 20381760
Alignment:
Q  197 tactctttcaaaaaatatgaaagatttat 225  Q
    |||||||||||||||||||||||||||||    
T  20381788 tactctttcaaaaaatatgaaagatttat 20381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 6538135 - 6538176
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6538135 cactctctaaaaaaatactctttcaaaaaatatgaaagattt 6538176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 35619447 - 35619381
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctc 248  Q
    |||||||| |||||||||| ||| |||||||||||||||||| ||  || |||| ||||||||||||    
T  35619447 cactctctcataaaatactatttaaaaaaatatgaaagatttttcaattttctcctatatttctctc 35619381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 50097762 - 50097803
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  50097762 cactctctaaaaaaatactctttcaaaaaatgtgaaagattt 50097803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 5883537 - 5883496
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||| ||||||||||||||||||||| ||||    
T  5883537 cactctctaacaaaagactctttcaaaaaatatgaaaaattt 5883496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 25561251 - 25561210
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    ||||| |||| |||||||||||||||||||| ||||||||||    
T  25561251 cactcgctaaaaaaatactctttcaaaaaatgtgaaagattt 25561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 49102904 - 49102867
Alignment:
Q  186 ctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  49102904 ctctaaaaaaatactctttcaaaaaatgtgaaagattt 49102867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 48776033 - 48775967
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctc 248  Q
    |||||||||| |||||||||||| | ||||||| |||||||||||  || ||||||||| |||||||    
T  48776033 cactctctaaaaaaatactctttaagaaaatataaaagatttatcaattttctcttatacttctctc 48775967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 43230129 - 43230168
Alignment:
Q  188 ctaataaaatactctttcaaaaaatatgaaagatttatcc 227  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  43230129 ctaaaaaaatactatttcaaaaaatatgaaagatttatcc 43230168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 22556637 - 22556596
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  22556637 cactctctaaaaaaatactcttttaaaaaatgtgaaagattt 22556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 38679923 - 38679879
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatc 226  Q
    |||||||| | ||||||| |||||||||||| |||||||||||||    
T  38679923 cactctcttaaaaaatacactttcaaaaaatgtgaaagatttatc 38679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 44487268 - 44487224
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatc 226  Q
    |||||||||| |||||||||| | ||||||| |||||||||||||    
T  44487268 cactctctaaaaaaatactctataaaaaaatgtgaaagatttatc 44487224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 46611816 - 46611772
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatc 226  Q
    |||||||||| |||||  ||||||||||||| |||||||||||||    
T  46611816 cactctctaaaaaaattatctttcaaaaaatgtgaaagatttatc 46611772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 1839753 - 1839712
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  1839753 cactctctaaaaaaatactctttcaaaaaatgtgaaagattt 1839712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 13258637 - 13258675
Alignment:
Q  185 tctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  13258637 tctctaaaaaaatactctttcaaaaaatgtgaaagattt 13258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 6447578 - 6447618
Alignment:
Q  206 aaaaaatatgaaagatttatccgttctctcttatatttctc 246  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  6447578 aaaaaatatgaaagatttctccattctcccttatatttctc 6447618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 3936513 - 3936472
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  3936513 cactctctaagaaaatactctttcaaaaattatgaaagattt 3936472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 15917540 - 15917581
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  15917540 cactctctacaaaaatactctttcaaaaaatatgaaagattt 15917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 27143368 - 27143409
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  27143368 cactctctaagaaaatactctttcaaaaaatgtgaaagattt 27143409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 13984905 - 13984867
Alignment:
Q  183 actctctaataaaatactctttcaaaaaatatgaaagatt 222  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  13984905 actctctaa-aaaatactctttcaaaaaatatgaaagatt 13984867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 28880139 - 28880205
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctctc 248  Q
    |||||||||| |||||||||||||||||||| | |||||||| ||  || || | ||||||||||||    
T  28880139 cactctctaaaaaaatactctttcaaaaaatgtaaaagatttctcaattttcccctatatttctctc 28880205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 45022467 - 45022429
Alignment:
Q  185 tctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  45022467 tctctaaaaaaatactctttcaaaaaatgtgaaagattt 45022429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 18397061 - 18397102
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  18397061 cactctttaagaaaatactctttcaaaaaatgtgaaagattt 18397102  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 21443184 - 21443213
Alignment:
Q  196 atactctttcaaaaaatatgaaagatttat 225  Q
    ||||||||||||||||||||||||||||||    
T  21443184 atactctttcaaaaaatatgaaagatttat 21443213  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 38644637 - 38644698
Alignment:
Q  185 tctctaataaaatactctttcaaaaaatatgaaagatttatccgttctctcttatatttctc 246  Q
    ||||||| |||||| ||||||||||||| |||||||||| ||| || | | |||||||||||    
T  38644637 tctctaaaaaaatagtctttcaaaaaatgtgaaagatttctccatttttttttatatttctc 38644698  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 18399750 - 18399790
Alignment:
Q  183 actctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    ||||| ||| |||||||||||||||||||| ||||||||||    
T  18399750 actctttaagaaaatactctttcaaaaaatttgaaagattt 18399790  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 31418889 - 31418845
Alignment:
Q  182 cactctctaataaaatactctttcaaaaaatatgaaagatttatc 226  Q
    ||||||||||  ||||||||||||||||| | |||||||||||||    
T  31418889 cactctctaaacaaatactctttcaaaaactgtgaaagatttatc 31418845  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 46891537 - 46891575
Alignment:
Q  185 tctctaataaaatactctttcaaaaaatatgaaagattt 223  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  46891537 tctctaaaaaaataatctttcaaaaaatatgaaagattt 46891575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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