View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2208_high_6 (Length: 210)
Name: NF2208_high_6
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_high_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 15489039 - 15488844
Alignment:
| Q |
13 |
tcatcaatacagtcgacggatgcattcagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaat |
112 |
Q |
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| T |
15489039 |
tcatcaataaagtcgacggatgcattcagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatcgcttgatcgatcttgtaat |
15488942 |
T |
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| Q |
113 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacattt |
210 |
Q |
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| T |
15488941 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacattt |
15488844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 15430644 - 15430449
Alignment:
| Q |
13 |
tcatcaatacagtcgacggatgcattcagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaat |
112 |
Q |
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| T |
15430644 |
tcatcaatatagtcgacggatgcattcagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatctcttgatcgatcttttaat |
15430547 |
T |
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| Q |
113 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacattt |
210 |
Q |
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| T |
15430546 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacattt |
15430449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 15450159 - 15449967
Alignment:
| Q |
16 |
tcaatacagtcgacggatgcattcagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgt |
115 |
Q |
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| T |
15450159 |
tcaatacagtcgacggatgcattcagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatcacttgatcgatcttttaattgt |
15450062 |
T |
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| Q |
116 |
aatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacattt |
210 |
Q |
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| T |
15450061 |
aatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatcctcagatcatcatcatcgtaaagaacattt |
15449967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 16943733 - 16943538
Alignment:
| Q |
13 |
tcatcaatacagtcgacggatgcattcagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaat |
112 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
16943733 |
tcatcaatacagtcgatggatgcatgcagaagcttcacaataa--catactttcgtctttaaatttccatttgaatcagtcacttgattgatcttgtaat |
16943636 |
T |
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| Q |
113 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacattt |
210 |
Q |
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| T |
16943635 |
tgtaatctaaagtcagctctttcatgctcggaatgttctcagctgcatatagcatgatttgtggaatccttggaacatcatcatcgtaaagaacattt |
16943538 |
T |
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