View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2208_low_1 (Length: 628)
Name: NF2208_low_1
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 31 - 526
Target Start/End: Complemental strand, 24632945 - 24632451
Alignment:
| Q |
31 |
acatgacatgaagaaatgactaaattgacacgaaatcaagatcaacgagctgtttgaaactttaaattgacgcgaaattaagatcaaggacccctgctgt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24632945 |
acatgacatgaagaaatgactaaattgacacgaaatcaagatcaaggacctgtttgaaactttaaattgacgcgaaattaagatcaaggaccc-tgctgt |
24632847 |
T |
|
| Q |
131 |
agtttttccttttagaatgtagttttccaggaactaattaccaaaatttcgtaattaaataactcactaacaactaggaattcatagaactacttacttt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24632846 |
agtttttccttttagaatgtagttttccaggaactaattaccaaaatttcgtaattaaataactcactaacaactaggaattcatagaactacctacttt |
24632747 |
T |
|
| Q |
231 |
ggttcagtctccttggattctgcagcagcagcaagctcctctttcaccggagtcgttaccgnnnnnnnnngcagtttgtgctgcaactacagcagcaaaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24632746 |
ggttcagtctccttggattctgcagcagcagcaagctcctctttcactggagtcgttaccgttttttattgcagtttgtgctgcaactacagcagcaaaa |
24632647 |
T |
|
| Q |
331 |
tcctggcttttcttttccaaagcctttccgagattggatcgcacaaaccttttaactttcgtattttctttaatagttgcaattgtctgcttaaccatat |
430 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24632646 |
tcctggcttttcttttccaaagcctctccgagattgaatcgcacaaaccttttaactttcgtattttctccaatagttgcaattgtctgcttaaccatat |
24632547 |
T |
|
| Q |
431 |
cttttactgtcactttatcaatcctgctcaagcaacgcaaaatcctcgagtcttttccttatctatccttcaacaatccttgatctattttgctcc |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24632546 |
cttttactgtcactttatcaatcctgctcaagcaacgcaaaatcctcgagtcttttccttatctatccttcaacaatccttgatctattttgctcc |
24632451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 174 - 606
Target Start/End: Original strand, 33415405 - 33415846
Alignment:
| Q |
174 |
aaatttcgtaattaaataactcactaacaactaggaattcatagaactac--ttactttggttcagtctccttggattctgcagcagcagcaagctcctc |
271 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
33415405 |
aaatttcataattaaataactcaataacaagtagaaattcattgaactacacttactttggttcagtctccttggcttctgcggcagcag---gctcctc |
33415501 |
T |
|
| Q |
272 |
tttcaccggagtcgttaccgnnnnnnnnngcagtttgtgctgcaactacagcagcaaaatcctggcttttcttttccaaagcctttccgagattggatcg |
371 |
Q |
| |
|
| |||| ||||| ||||||| | ||||||||| || ||| |||||||||||||||||||||||||||||||| | | |||||| ||| | || |
|
|
| T |
33415502 |
tgtcactggagtagttaccgcttttgct-gaagtttgtgcggcgacttcagcagcaaaatcctggcttttcttttccaaaccttctccgaggttgaaacg |
33415600 |
T |
|
| Q |
372 |
cacaaaccttttaactttcgtattttctttaatagttgcaattgtctgcttaaccatatcttttactgtcactttatcaatc-----------ctgctca |
460 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
33415601 |
cacaaaccttgtaactttcatattttctccaatggttgcaattgtctgcttaaccatatcctttactgtcactttatcattcttgatgtagggctgctca |
33415700 |
T |
|
| Q |
461 |
agcaacgcaaaatcctcgagtcttttccttatctatccttcaacaatccttgatctattttgctccggttttcacgcaagatcttctttttgcatttcta |
560 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33415701 |
agcaacgctaaatcctcaagtcttttccttatccgtccttcaacaatccttgatcttatttgctccggttttgacgcaagatcttctttttgcatttcta |
33415800 |
T |
|
| Q |
561 |
tctccgtttctattatcacaaattcctcaggaacgtcttcggtaac |
606 |
Q |
| |
|
||||||||||| | ||| || ||||| ||||||||||| ||||| |
|
|
| T |
33415801 |
tctccgtttctttcttcaggaactcctcgggaacgtcttcagtaac |
33415846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 373 - 603
Target Start/End: Original strand, 33294087 - 33294315
Alignment:
| Q |
373 |
acaaaccttttaactttcgtattttctttaatagttgcaattgtctgcttaaccatatcttttactgtcactttatcaatcctgctcaagcaacgcaaaa |
472 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
|
|
| T |
33294087 |
acaaaccttgtaactttcatattttctccaatagttgcaattatcagcttaaccatatcttttcctgtcactttatcaatcctgctcaagcaatgctaaa |
33294186 |
T |
|
| Q |
473 |
tcctcgagtcttttccttatctatccttcaacaatccttgatctattttgctccggttttcacgcaagatcttctttttgcatttctatctccgtttcta |
572 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||| |||||||| ||| || |
|
|
| T |
33294187 |
tcctcaagtcttttccttatccgtccttcaacaatccttgatctaatttgctctggttttgacgcaagacattctttttgca--tctatctctgttcctt |
33294284 |
T |
|
| Q |
573 |
ttatcacaaattcctcaggaacgtcttcggt |
603 |
Q |
| |
|
| |||| ||||||||||||| ||||||||| |
|
|
| T |
33294285 |
tcttcacgaattcctcaggaatgtcttcggt |
33294315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 33384945 - 33385120
Alignment:
| Q |
34 |
tgacatgaagaaatgactaaattgacacgaaatcaagatcaacgagctgtttgaaactttaaattgacgcgaaattaagatcaaggacccctgctgtagt |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||| || |||||||| ||||||||| ||| | ||||||||||| |||||| |
|
|
| T |
33384945 |
tgacatgaagaaatgactaaattaacacgaaaacaatatcaaggacttgtttgaacctttaaatt-----------aagttaaaggacccctgttgtagt |
33385033 |
T |
|
| Q |
134 |
ttttccttttagaatgtagttttccaggaactaattaccaaaatttcgtaattaaataactcactaacaactaggaattcatagaac |
220 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
33385034 |
ttgttcttttagaatgtagttttccaggaactaattaccaaaatttcataattaaataactcaataacaagtaggaattcatagaac |
33385120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 479 - 606
Target Start/End: Original strand, 9164765 - 9164892
Alignment:
| Q |
479 |
agtcttttccttatctatccttcaacaatccttgatctattttgctccggttttcacgcaagatcttctttttgcatttctatctccgtttctattatca |
578 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||| |||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
9164765 |
agtcttttccttatccatccttcaacaatccttgatctactttgctccggttttgatgcaaaatcttccttttgcatttctatctccgtttctttcttca |
9164864 |
T |
|
| Q |
579 |
caaattcctcaggaacgtcttcggtaac |
606 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
9164865 |
caaattcctcaggaacatcttcagtaac |
9164892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 33270438 - 33270542
Alignment:
| Q |
502 |
aacaatccttgatctattttgctccggttttcacgcaagatcttctttttgcatttctatctccgtttctattatcacaaattcctcaggaacgtcttcg |
601 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||| | |
|
|
| T |
33270438 |
aacaatccttgatctaatttgctccgattttgacgcaagatcttccttttgcatttctatctccgtttctttcttcacgaattcctcaggaacgtctttg |
33270537 |
T |
|
| Q |
602 |
gtaac |
606 |
Q |
| |
|
||||| |
|
|
| T |
33270538 |
gtaac |
33270542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 322 - 424
Target Start/End: Original strand, 33270336 - 33270438
Alignment:
| Q |
322 |
gcagcaaaatcctggcttttcttttccaaagcctttccgagattggatcgcacaaaccttttaactttcgtattttctttaatagttgcaattgtctgct |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||| ||| | ||||||||||| |||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
33270336 |
gcagcaaaatcctggcttttcttttccaaaccttctccgaggttgaactgcacaaaccttgtaactttcatattttctccaatagttgcaattctctgct |
33270435 |
T |
|
| Q |
422 |
taa |
424 |
Q |
| |
|
||| |
|
|
| T |
33270436 |
taa |
33270438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 558 - 609
Target Start/End: Complemental strand, 24632451 - 24632400
Alignment:
| Q |
558 |
ctatctccgtttctattatcacaaattcctcaggaacgtcttcggtaacgac |
609 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24632451 |
ctatctccgtttctatcatcacaaattcctcaggaacgtcttcggtaacgac |
24632400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 9164707 - 9164765
Alignment:
| Q |
37 |
catgaagaaatgactaaattgacacgaaatcaagatcaacgagctgtttgaaactttaa |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||| |
|
|
| T |
9164707 |
catgaagaaatgactaaattgacactaaaacaagatcaaggacctgtttgaaactttaa |
9164765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 33270122 - 33270185
Alignment:
| Q |
34 |
tgacatgaagaaatgactaaattgacacgaaatcaagatcaacgagctgtttgaaactttaaatt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
33270122 |
tgacatgaagaaatgactaaattgacacgaaa-aaagatcaaggatctgtttgaaacattaaatt |
33270185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University