View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2208_low_2 (Length: 576)
Name: NF2208_low_2
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 6024558 - 6025104
Alignment:
| Q |
18 |
acatcccgttgtgttgcaaaaataacttcctacgatgattgaataaacgcctccatgcaagtatactctatctatcatgtttaataaagacatgttgcca |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6024558 |
acatcctgttgtgttgcaaaaataacttcctacgatgattgaataaacgcctccatgcaagtatactctatctatcatgtttaataaagacatgttgcca |
6024657 |
T |
|
| Q |
118 |
tgatgagtaattcatttttataataattaaaattaaatttcagtaagttagatttcttaaatctgttctcatgatggtgccnnnnnnnnnnnnnnnnnna |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6024658 |
tgatgagtaattcatttttataataattaaaattaaatttcagtaagttagatttcttaaatctgttctcatcatggtgcctttttttttttttttt--- |
6024754 |
T |
|
| Q |
218 |
tattgtaagttttaagcactacaatataaaatcagattgaacgggacacaaattcaatttaggacatgcacacatagggtaagaatctggtttatgaaag |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6024755 |
tattgtaagttttaagcactgcaatataaaatcagattgaacgggacacaaattcaatttaggacatgcacacataaggtaagaatctggtttatgaaag |
6024854 |
T |
|
| Q |
318 |
tcctaaattcataaaactgcaacattactattctcctttatgaccatttttcaccaatcattacaagtacatctattttacagtcaagtgttttgttaat |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6024855 |
tcctaaattcataaaactgcaacatcactattctcctttatgaccatttttcaccaatcattacaagtacatctattttacagtcaagtgttttgttaat |
6024954 |
T |
|
| Q |
418 |
ggctctctttctgctcatagtctgagagcatcctctatagacattagaaatagacaaggtaggctagaagtgaataacggcatgctgtacatggatgatg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6024955 |
ggctctctttctgctcatagtctgagagcatgctctatagacattagaaatagacaaggtaggctagaagtgaataacggcatgctgtacatggatgatg |
6025054 |
T |
|
| Q |
518 |
ccctggtagttccattctcttcccctgtaaaccatgcttctcacctttgc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6025055 |
ccctggtagttccattctcttcccctgtaaaccatgcttctcacctttgc |
6025104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University