View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2208_low_4 (Length: 475)
Name: NF2208_low_4
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 34694775 - 34695226
Alignment:
| Q |
1 |
cctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaactacctacacccccattttcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694775 |
cctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaactacctacacccccattttcct |
34694874 |
T |
|
| Q |
101 |
ctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttctctggttttccaaatatgagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694875 |
ctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttctctggttttccaaatatgagtca |
34694974 |
T |
|
| Q |
201 |
atctttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgaccttttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34694975 |
atctttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgaccttttt |
34695074 |
T |
|
| Q |
301 |
tatcaagtgaatattcaagatgagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatg |
400 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695075 |
gatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatg |
34695174 |
T |
|
| Q |
401 |
atcattcaactgatcttgctcctctccctccggccattgacatgagtgcacc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34695175 |
atcattcaactgatcttgctcctctccctccggccattgacatgagtgcacc |
34695226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 34686849 - 34687306
Alignment:
| Q |
1 |
cctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaactacctacacccccattttcct |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
34686849 |
cctaattcacctgcaatctctctgaaccaaaaccaagatgatacttatcctgacaccctcgctgaaaccggtctacaactacctacacccccatttccct |
34686948 |
T |
|
| Q |
101 |
ctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttctctggttttccaaatatgagtca |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||| |||||||||||||| ||| || ||||||| | | |
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|
| T |
34686949 |
ctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgacaacactagaggggtctaattacttctctgatttcccgaatatgattga |
34687048 |
T |
|
| Q |
201 |
atctttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgaccttttt |
300 |
Q |
| |
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| | | ||||||| ||||||||||||||||||| || ||||||||||||||||||||| ||| ||| |||||||||||| |||| || |||| |||||| |
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|
| T |
34687049 |
accctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttt |
34687148 |
T |
|
| Q |
301 |
tatcaagtgaatattcaagatgagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatg |
400 |
Q |
| |
|
||||||| |||||||||||| || |||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
34687149 |
tatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg |
34687248 |
T |
|
| Q |
401 |
atcattcaactgatcttgctcctctccctccggccattgacatgagtgcaccggatgatgt |
461 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
34687249 |
---attcaactgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgt |
34687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 8284726 - 8284906
Alignment:
| Q |
2 |
ctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaactacctacacccccattttcctc |
101 |
Q |
| |
|
|||||||||||||| | || |||||||||| |||| |||| ||||| ||| |||| |||||||||| | |||||||||||||||||||||||| ||| |
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|
| T |
8284726 |
ctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaaccgatttacaactacctacacccccatttttctc |
8284825 |
T |
|
| Q |
102 |
tttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttctctggttt |
185 |
Q |
| |
|
|||||| || |||||||||||||| || ||||||| ||||| ||||| | | ||| | |||||||| |||| |||||||| |
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|
| T |
8284826 |
tttccctgtgcagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttatctggttt |
8284906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 431
Target Start/End: Original strand, 8284953 - 8285179
Alignment:
| Q |
205 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgaccttttttatc |
304 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | | ||| |
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|
| T |
8284953 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
8285052 |
T |
|
| Q |
305 |
aagtgaatattcaagatgagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
404 |
Q |
| |
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||| ||| |||||||| || | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
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| T |
8285053 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
8285152 |
T |
|
| Q |
405 |
ttcaactgatcttgctcctctccctcc |
431 |
Q |
| |
|
||| ||||||||||||||| ||||| |
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|
| T |
8285153 |
gtcagttgatcttgctcctcttcctcc |
8285179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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