View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2208_low_5 (Length: 468)
Name: NF2208_low_5
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Original strand, 32904982 - 32905423
Alignment:
| Q |
11 |
caaaggaaatttgaactataggaagggttagtgttccacatgtgacgaacgaatgtttaaattgcggtcgaaaaagatgttcatatttaaagtttaataa |
110 |
Q |
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| T |
32904982 |
caaaggaaatttgaactataggaagggttagtgttccacatgtgacgaacgaatgtttaaattacggttgaaaaagatgttcatatttaaagtttaataa |
32905081 |
T |
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| Q |
111 |
tttctcttgagtaaaattacttcttaaaaaacaaaattagtgcgacaattcaaattcacattaccttatctttcaattgagttatagaatctctgatgca |
210 |
Q |
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| T |
32905082 |
tttctcttgagtaaaattacttcttaaaaaacaaaataagcgcgacaattcaaattcacattaccttatctttcaattgagttatagaatctctgatgca |
32905181 |
T |
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| Q |
211 |
annnnnnnnaaaccaaaacaaaatcccaaaaggtgcatcttgatcgattcgaaagtgaactaaacccaatttatctaaaattgttgtgtctatgatgaat |
310 |
Q |
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| T |
32905182 |
attttttt-aaaccaaaacaaaatcccaaaaggtgcatcttgatcgattcgaaagtgaactaaacccaatttatctaaaattgttgtgtctatgatgaat |
32905280 |
T |
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| Q |
311 |
ctggaagtgatttaatatgtatcacaatgactccataaatctcataatattttttgttatttagattgatctcggacttgattttgaattttttaccgac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32905281 |
ctggaagtgatttaatatgtatcacaatgactccataaatctcataatattttttgttatttagattgatctcggacttgattttgaattttttacggac |
32905380 |
T |
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| Q |
411 |
aaatgttagtggttagtttgttataacaattgaaaattaatgt |
453 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32905381 |
aaatgttagtggttagttggttataacaattgaaaattaatgt |
32905423 |
T |
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