View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2208_low_6 (Length: 274)
Name: NF2208_low_6
Description: NF2208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2208_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 49518268 - 49518026
Alignment:
| Q |
1 |
aaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49518268 |
aaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttcctttttttaaattttaga |
49518169 |
T |
|
| Q |
101 |
ttatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttgtcaacagcaaccatatccatgtgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49518168 |
ttatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaa--------------gctttgtcaacagcaaccatatccatgtgtt |
49518083 |
T |
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| Q |
201 |
ggaggttattatgatctttgtcatttttactcatttgtgctttcttcctcttcttaa |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49518082 |
ggaggttattatgatctttgtcatttttactcatttgtgctttcttcctcttcttaa |
49518026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 27747639 - 27747445
Alignment:
| Q |
1 |
aaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttaga |
100 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
27747639 |
aaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttaga |
27747540 |
T |
|
| Q |
101 |
ttatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttgtcaacagcaaccatatccat |
195 |
Q |
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| T |
27747539 |
ctatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccat |
27747445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 38527375 - 38527452
Alignment:
| Q |
98 |
agattatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttg |
175 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38527375 |
agattatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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