View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209-Insertion-1 (Length: 1049)
Name: NF2209-Insertion-1
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 891; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 891; E-Value: 0
Query Start/End: Original strand, 7 - 1040
Target Start/End: Original strand, 31098040 - 31099080
Alignment:
| Q |
7 |
atcatttgcctcatatgatattgctcgatctttatgagtcacaattgaatctcagtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaa |
106 |
Q |
| |
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| T |
31098040 |
atcatttgcctcatatgatattgctcgatctttgtgt-tcacaattgaatctcggtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaa |
31098138 |
T |
|
| Q |
107 |
cttcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttaaaagtcttgcggatgaacttgttgttattgattgaacccttt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098139 |
cttcaactctgcacaaagggagaaaaatcaatcaccgattacttgttgttctcatttagaagtcttgcggatgaacttgttgttattgattgaacccttt |
31098238 |
T |
|
| Q |
207 |
tagatgatgattttacccttcatattctgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgcttttga |
306 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098239 |
tagatgatgattttacccttcatattatgaatggtctttgcacttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgcttttga |
31098338 |
T |
|
| Q |
307 |
ggagcttcacagccatctacttgctcatgatgactaccttcgtcattaaacacaaactgatatacaagttccttttgcaaattttgcaatgctgcggcgg |
406 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098339 |
ggagcttcacagccatctacttgctcacgatgactaccttcgtcattaaacacaaactgatatacaagttccttttgcaaattttgcaatgctgcggcgg |
31098438 |
T |
|
| Q |
407 |
caaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaaacgcatctttctcttctcgcagtacatagctc |
506 |
Q |
| |
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| T |
31098439 |
caaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaaacgcatctttctcttctcgcagtacatagctc |
31098538 |
T |
|
| Q |
507 |
tcattttcttaaaactcgtggctttaccttgttgcaacagacctccatcaagatgcaaaaaatactccctccttggtcacaatctcccactgccttcgca |
606 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |
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| T |
31098539 |
tcattttcttaaaactcgtggctttacctcgttgcaacagacctccatcaagatgcaaatattactccctccttggtcacaatctcccactgcctttgca |
31098638 |
T |
|
| Q |
607 |
accacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaac |
706 |
Q |
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| T |
31098639 |
accacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaac |
31098738 |
T |
|
| Q |
707 |
tctgtaatgtgtcatattnnnnnnnncatgaacttctattttccgtatgtccataaaaactagttgtcctcttgaactca-tttttctgatgtttggaga |
805 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31098739 |
tctgtaatgtgtcatattaaaaaaaacatgaacttctgttttctgtatgtccataaaaactagttgtcctcttgaactcattttttctgatgtttggaga |
31098838 |
T |
|
| Q |
806 |
ccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattg |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098839 |
ccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattg |
31098938 |
T |
|
| Q |
906 |
atgcttcttacatttcccccaacttttcac-aaagttagaacatattttgcgcag-aattaaatccatttacactgacagt-gcattg-atatttcaaat |
1001 |
Q |
| |
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| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
31098939 |
acgcttcttccatttcccccaacttttcacaaaagttagaacatattttgcgcagaaattaaatccatttacactgacagtggcattgaatatttcaaat |
31099038 |
T |
|
| Q |
1002 |
t-aaaccatact--aaatcacatggaatatctcattacacca |
1040 |
Q |
| |
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| |||||||||| |||||||||||||||||||| ||||||| |
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| T |
31099039 |
taaaaccatacttaaaatcacatggaatatctcactacacca |
31099080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 833 - 908
Target Start/End: Original strand, 1701880 - 1701955
Alignment:
| Q |
833 |
tacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatg |
908 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| ||||| |
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| T |
1701880 |
tacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatg |
1701955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 1700829 - 1700908
Alignment:
| Q |
271 |
ctccattcgcacatgtcaacacccctttgcttttgaggagcttcacagccatctacttgctcatgatgactaccttcgtc |
350 |
Q |
| |
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||||||||||||| | |||||||| ||| | |||||||||||||| |||||||| || || |||||||||||||| |||| |
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| T |
1700829 |
ctccattcgcacacgccaacacccttttacctttgaggagcttcatagccatcttctcgcacatgatgactacctgcgtc |
1700908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 888
Target Start/End: Complemental strand, 26592636 - 26592503
Alignment:
| Q |
756 |
tccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaattaaca-ctatcagtggatacaaatattatcttgtgttc |
853 |
Q |
| |
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||||||||||||| || |||||| ||||| ||||| |||||||||||| |||| || || || |||| | || | ||| || | ||| ||||||||||| |
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| T |
26592636 |
tccataaaaactaattctcctctagaacttattttctctgatgtttggggaccatcccctat-aacatccattaatggttatagatactatcttgtgttt |
26592538 |
T |
|
| Q |
854 |
gttgatcattttactagatataaatggatttatcc |
888 |
Q |
| |
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||||| || ||||||||||||| |||||||||||| |
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| T |
26592537 |
gttgaccactttactagatatacatggatttatcc |
26592503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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