View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209-Insertion-5 (Length: 525)
Name: NF2209-Insertion-5
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 259 - 416
Target Start/End: Complemental strand, 1028403 - 1028242
Alignment:
| Q |
259 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacagagatgaccatgagcttttgcttccaag |
358 |
Q |
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| T |
1028403 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacaaagatgaccatgagcttttgcttccaag |
1028304 |
T |
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| Q |
359 |
ggctaacatcgatcgtatttggtatc----tctggtattttaaatgatatttaaatgttggt |
416 |
Q |
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| T |
1028303 |
ggccaacatcgatcgtatttggtatctctgtctggtatttcgaatgatttttaaatgttggt |
1028242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 1033823 - 1033698
Alignment:
| Q |
8 |
aatttcaggcgcccaatcactgatcttaacaacattggttttctcttcctttacaattgtaacatgcaatctgctacgtgca-aggttggtgatcagaaa |
106 |
Q |
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| T |
1033823 |
aatttcaggcacccgatcactgatcttaacaacattggttttctcttcctttacaattgtaacacgcaatctgctacgtgcagaggttgatgatcagaaa |
1033724 |
T |
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| Q |
107 |
tttcatcgacatcgtacttcagcatc |
132 |
Q |
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| T |
1033723 |
tttcatcgataacgtacttcagcatc |
1033698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 1033688 - 1033609
Alignment:
| Q |
182 |
ttccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
261 |
Q |
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| T |
1033688 |
ttccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcaactgccaggaatcaccaa |
1033609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 1032819 - 1032773
Alignment:
| Q |
436 |
ttttactttgttcgtgcgtgtac---tttgtatgctaattataattc |
479 |
Q |
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| T |
1032819 |
tttttctttgttcgtgcgtgtacttttttgtatgctaattataattc |
1032773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 50832251 - 50832502
Alignment:
| Q |
8 |
aatttcaggcgcccaatcactgatcttaacaacattggttttctcttcctttacaattgtaacatgca----------------atctgctacgtgca-a |
90 |
Q |
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| T |
50832251 |
aatttcaggcatccaatcactgatcttaacaacattggttttctcttcctttacaattgtaacacgcaaggctctggttggtccatctgctacttggaga |
50832350 |
T |
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| Q |
91 |
ggttggtgatcagaaatttcatcgacatcgtacttcagcatcgtacttcagggatttcattgggtcagttccatctaccaagagttccaacttccaatga |
190 |
Q |
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| T |
50832351 |
ggctggtgatcagaaatttcatcgatatcgtacttcagc-------------gatttcattgggtcagttccatctaccaagag-------ttccaataa |
50832430 |
T |
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| Q |
191 |
acgtcttctacacagaccttcccatagaaatgaagca---gaatttggaagcagcaactgccagcaatcacc |
259 |
Q |
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| T |
50832431 |
acgtctcctaccaagatcttcccacagaaatgaagcagcggaattcggaagcagcaactgccaggaatcacc |
50832502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 4516330 - 4516242
Alignment:
| Q |
41 |
attggttttctcttcctttacaattgtaacatgcaatctgctacgtgca-aggttggtgatcagaaatttcatcgacatcgtacttcag |
128 |
Q |
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| T |
4516330 |
attggttttctcttcctttacaattgtaacacgcaatctgctacgtgcagaggttgatgattagaaatttcatcgttatcgtagttcag |
4516242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 4516227 - 4516149
Alignment:
| Q |
183 |
tccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
261 |
Q |
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| T |
4516227 |
tccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcagctgccaggaatcaccaa |
4516149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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