View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2209-Insertion-7 (Length: 181)
Name: NF2209-Insertion-7
Description: NF2209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2209-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 19456909 - 19457083
Alignment:
| Q |
7 |
aagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19456909 |
aagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
19457008 |
T |
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| Q |
107 |
gaccgccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcat |
181 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19457009 |
gaccgctgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcat |
19457083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 22398 - 22572
Alignment:
| Q |
7 |
aagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
106 |
Q |
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||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22398 |
aagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
22497 |
T |
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| Q |
107 |
gaccgccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcat |
181 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||| |
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| T |
22498 |
gaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcat |
22572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 10197690 - 10197516
Alignment:
| Q |
7 |
aagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
106 |
Q |
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||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197690 |
aagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
10197591 |
T |
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| Q |
107 |
gaccgccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcat |
181 |
Q |
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| T |
10197590 |
gaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcat |
10197516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 3e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 25026182 - 25026008
Alignment:
| Q |
7 |
aagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctg |
106 |
Q |
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||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25026182 |
aagaacctcttctcgctccaaacccagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctg |
25026083 |
T |
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| Q |
107 |
gaccgccgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcat |
181 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||| |
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| T |
25026082 |
gaccgccgaagaagtcgatctttcctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcat |
25026008 |
T |
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