View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2209R-Insertion-1 (Length: 994)

Name: NF2209R-Insertion-1
Description: NF2209R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2209R-Insertion-1
NF2209R-Insertion-1
[»] chr3 (13 HSPs)
chr3 (420-737)||(35563704-35564021)
chr3 (250-413)||(35564076-35564230)
chr3 (251-388)||(45103347-45103484)
chr3 (251-325)||(2848494-2848568)
chr3 (251-305)||(51536374-51536428)
chr3 (251-305)||(53612638-53612692)
chr3 (251-342)||(33635785-33635876)
chr3 (250-307)||(29728803-29728860)
chr3 (248-297)||(30464494-30464543)
chr3 (250-342)||(10258313-10258405)
chr3 (251-297)||(23241319-23241365)
chr3 (271-305)||(42908684-42908718)
chr3 (250-307)||(11334776-11334832)
[»] chr4 (11 HSPs)
chr4 (441-721)||(12819576-12819856)
chr4 (659-814)||(12819856-12820010)
chr4 (555-761)||(5360960-5361173)
chr4 (250-333)||(12819357-12819440)
chr4 (251-353)||(2860254-2860352)
chr4 (249-305)||(41219945-41220001)
chr4 (251-294)||(25511479-25511522)
chr4 (251-328)||(10005086-10005162)
chr4 (251-292)||(41867736-41867777)
chr4 (250-283)||(44352851-44352884)
chr4 (371-415)||(12819460-12819504)
[»] chr5 (9 HSPs)
chr5 (492-761)||(39050167-39050441)
chr5 (251-405)||(33897472-33897627)
chr5 (251-395)||(32623011-32623155)
chr5 (251-342)||(8760208-8760299)
chr5 (255-353)||(813945-814038)
chr5 (250-312)||(6460561-6460623)
chr5 (679-715)||(33583136-33583172)
chr5 (251-297)||(22638803-22638849)
chr5 (269-303)||(36745546-36745580)
[»] chr2 (14 HSPs)
chr2 (492-761)||(35303420-35303694)
chr2 (555-803)||(30962483-30962734)
chr2 (251-325)||(29523122-29523196)
chr2 (250-378)||(30962169-30962295)
chr2 (251-325)||(18541487-18541561)
chr2 (251-295)||(19262286-19262330)
chr2 (251-325)||(39061161-39061235)
chr2 (249-297)||(7502182-7502230)
chr2 (250-293)||(3989764-3989807)
chr2 (251-342)||(7154338-7154429)
chr2 (251-342)||(31901772-31901863)
chr2 (250-284)||(23292315-23292349)
chr2 (251-297)||(37314227-37314273)
chr2 (251-292)||(12341198-12341239)
[»] chr8 (12 HSPs)
chr8 (492-761)||(18655984-18656258)
chr8 (510-761)||(4454739-4454995)
chr8 (311-388)||(4454507-4454584)
chr8 (251-305)||(40484689-40484743)
chr8 (252-305)||(14910919-14910972)
chr8 (251-295)||(9457413-9457457)
chr8 (251-283)||(42064207-42064239)
chr8 (251-305)||(3656573-3656627)
chr8 (251-297)||(13486455-13486501)
chr8 (251-285)||(14269916-14269950)
chr8 (251-297)||(27678559-27678605)
chr8 (250-284)||(27844955-27844989)
[»] chr7 (14 HSPs)
chr7 (492-761)||(24096255-24096529)
chr7 (299-405)||(24096011-24096117)
chr7 (250-305)||(36098823-36098878)
chr7 (251-325)||(11733479-11733553)
chr7 (269-342)||(36859040-36859113)
chr7 (251-342)||(29984148-29984239)
chr7 (251-293)||(1583219-1583261)
chr7 (250-307)||(20130580-20130637)
chr7 (251-304)||(34258499-34258552)
chr7 (251-305)||(16197972-16198026)
chr7 (251-297)||(34190958-34191004)
chr7 (250-291)||(10991934-10991975)
chr7 (250-307)||(44605040-44605097)
chr7 (269-342)||(47424630-47424703)
[»] chr1 (12 HSPs)
chr1 (516-761)||(4224458-4224708)
chr1 (112-213)||(813915-814016)
chr1 (246-303)||(28235715-28235772)
chr1 (251-294)||(31985152-31985195)
chr1 (251-305)||(32364977-32365031)
chr1 (250-292)||(46546114-46546156)
chr1 (251-283)||(42867022-42867054)
chr1 (332-404)||(43060770-43060842)
chr1 (250-304)||(12793608-12793662)
chr1 (251-297)||(44258541-44258587)
chr1 (270-303)||(18033535-18033568)
chr1 (272-305)||(20726846-20726879)
[»] scaffold0074 (3 HSPs)
scaffold0074 (597-761)||(55334-55503)
scaffold0074 (251-405)||(54920-55074)
scaffold0074 (517-580)||(55234-55297)
[»] chr6 (6 HSPs)
chr6 (251-342)||(22350471-22350562)
chr6 (679-730)||(9407444-9407495)
chr6 (251-290)||(29291646-29291685)
chr6 (250-290)||(24067317-24067357)
chr6 (248-323)||(24431498-24431573)
chr6 (251-297)||(21528099-21528145)
[»] scaffold0131 (1 HSPs)
scaffold0131 (250-305)||(7196-7251)
[»] scaffold0036 (1 HSPs)
scaffold0036 (251-305)||(52713-52767)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 420 - 737
Target Start/End: Complemental strand, 35564021 - 35563704
Alignment:
Q  420 aagggcgtggtatgttttaaataaaaaattccactttgcctagagagaaaatcgaaccggcaacctctgctataaatatgcaatgcactaaccactacac 519  Q
    ||||||||||| | ||||||| |||||| |||||||||||||||||   |||| ||| |||||||||||||||||||||||||||||||||||||  |||    
T  35564021 aagggcgtggtctattttaaaaaaaaaaatccactttgcctagagaaggaatcaaactggcaacctctgctataaatatgcaatgcactaaccaccccac 35563922  T
Q  520 catgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgtgaaacattga 619  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35563921 catgcattgaattgtgttacagatttgcttattaattattatattaaattcaattgtaaaaggtcactaaaattcacatttcttttttgtgaaacattga 35563822  T
Q  620 aattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatg 719  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35563821 aattcataattaattttaatgatatatttcataattgtgttattgttttgcttcttatttgtaatgtttcaatgatatttttcataattttagcttaatg 35563722  T
Q  720 atatatcgcaattttaaa 737  Q
    |||||| |||||||||||    
T  35563721 atatattgcaattttaaa 35563704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 250 - 413
Target Start/End: Complemental strand, 35564230 - 35564076
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgtta 349  Q
    |||||||||||||||||| | ||||| ||||| ||||||||         ||||||||| | |||| |||||||||||||||||||||||||||||| ||    
T  35564230 ccatagttttaaaactcgtatcggactggccgatcgaaccg---------tgaaccagaggtttagtcggttcggtccactaattggatcggttatgcta 35564140  T
Q  350 ttgaaccactatgaactggtcaaactcggccagaaccggattaaaccggtgactcgttggtctg 413  Q
    ||||||| ||  |||| | ||||||||||||||||||||||||||||||||||||  |||||||    
T  35564139 ttgaaccgctgcgaaccgatcaaactcggccagaaccggattaaaccggtgactcagtggtctg 35564076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 45103347 - 45103484
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgttat 350  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||| ||||||| |  | | ||||||| |||| |||| ||||||||||||||| |||    
T  45103347 cataattttaaaactcggaccggaccggccgatcgaaccggttcgaccgtgaaccggtggataagccggtccggttcacttattggatcggttatgctat 45103446  T
Q  351 tgaaccactatgaactggtcaaactcggccagaaccgg 388  Q
    |||  | ||| |||| |||  ||||||||| |||||||    
T  45103447 tgactcgctacgaaccggtgtaactcggcctgaaccgg 45103484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 2848494 - 2848568
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggt 325  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||||||| || || || ||||||||||    
T  2848494 catagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggt 2848568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 51536374 - 51536428
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||| |||||||    
T  51536374 catagttttaaaaaccggatcggaccggccggtcgaaccggtccgaccgtgaacc 51536428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 53612692 - 53612638
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||    
T  53612692 catagttttaaaattcggaccggatcggccggtcgaaccggtcggactgcgaacc 53612638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 33635876 - 33635785
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  ||||||||| |||||||||||||||||||||| ||||| | || || || ||||||||||  ||  |||||||||||    
T  33635876 catagttttgaaaaccggaccggatcggccggtcgaaccggtccgaccgtgaatcggaggggtaaccggttcggttgacatattggatcggt 33635785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 29728860 - 29728803
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccag 307  Q
    ||||||||||||||   ||  ||||||||||||||||||||||||||| |||||||||    
T  29728860 ccatagttttaaaaactggctcggaccggccggtcgaaccggtccgaccgtgaaccag 29728803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 30464494 - 30464543
Alignment:
Q  248 atccatagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    |||||||||||| ||| || |||||||||||||||| |||||||||||||    
T  30464494 atccatagttttgaaaatcagaccggaccggccggttgaaccggtccgac 30464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 10258313 - 10258405
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    |||||||||| |||  |||||||||||||||| ||||||| ||| ||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  10258313 ccatagttttgaaaaccggaccggaccggccgatcgaaccagtcggaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 10258405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 23241319 - 23241365
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||    
T  23241319 catagttttgaaaaccggaccggaccggccggttgaaccggtccgac 23241365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 42908718 - 42908684
Alignment:
Q  271 cggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    ||||||||||||||||||||||||||| |||||||    
T  42908718 cggaccggccggtcgaaccggtccgaccgtgaacc 42908684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 11334776 - 11334832
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccag 307  Q
    |||||||||| |||  ||||||||||||||| ||  ||||||||||||||||||||||    
T  11334776 ccatagttttgaaaaccggaccggaccggccagtt-aaccggtccgactgtgaaccag 11334832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 441 - 721
Target Start/End: Original strand, 12819576 - 12819856
Alignment:
Q  441 taaaaaattccactttgcctagagagaaaatcgaaccggcaacctctgctataaatatgcaatgcactaaccactacaccatgcattgaattgtgttacc 540  Q
    ||||||||||||||||| ||| ||||  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  12819576 taaaaaattccactttgactaaagagggaatcgaactggcaacctctactataaatatgcaatgcactaaccaccacaccatgcattgaattgtgttact 12819675  T
Q  541 gatttgcttattaattattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgtgaaacattgaaattcataattatttttaatg 640  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12819676 gatttgcttattaattattatattaaattcaattgtaaaatgtcactaaaattcacatttcttttttgtgaaacattgaaattcataattatttttaatg 12819775  T
Q  641 atatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgat 721  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12819776 atatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgat 12819856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 659 - 814
Target Start/End: Original strand, 12819856 - 12820010
Alignment:
Q  659 ttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgatatatcgcaattttaaagttatatacaattatttttaa 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12819856 ttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgatatattgcaattttaaagttatatacaattatttttaa 12819955  T
Q  759 cacnnnnnnnnntacacttgtttgtagatattgttgtgattaatatttattctgtc 814  Q
    |||         |||||||| ||||| |||||||||||||||||||||||| ||||    
T  12819956 cac-aaaaaaaatacacttgcttgtaaatattgttgtgattaatatttattttgtc 12820010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 555 - 761
Target Start/End: Complemental strand, 5361173 - 5360960
Alignment:
Q  555 ttattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgtgaaa-cattgaaattcataattatttttaatgatatatttcataa 653  Q
    ||||||||||||||||||||| ||||  |||||| |||||| ||||| ||| | | ||| |||||||||||| |||||||||||||||||||||||||||    
T  5361173 ttattatattaaattcaattgcaaaatttcactataattcatatttcatttatataaaaacattgaaattcacaattatttttaatgatatatttcataa 5361074  T
Q  654 ttgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgatatatcgcaat------tttaaagttatataca 747  Q
    ||||| || ||| ||  ||| |||||||| ||||| |||||||||||||||||||||||||||| || |||| |||||      || ||| |||||||||    
T  5361073 ttgtgctactgtcttaattcgtatttttattgtttaaatgatatttttcataattttagcttaacgacatattgcaatttatacttaaaaattatataca 5360974  T
Q  748 attatttttaacac 761  Q
    ||||||||||||||    
T  5360973 attatttttaacac 5360960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 12819357 - 12819440
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaat 333  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| || ||||||||||||| ||||| ||||    
T  12819357 ccatagttttaaaactcggaccggatcggccagtcgaaccggtccgaccgtgaaccggagggttagccggttcagtccattaat 12819440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 2860352 - 2860254
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgttat 350  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     ||| ||||||| |||| |||| ||||||||||||||| |||    
T  2860352 catagttttaaaactcggatcggaccggccggtcgaaccggtccgaccgtgaac----gggtaagccggtccggttcacttattggatcggttatgctat 2860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 41219945 - 41220001
Alignment:
Q  249 tccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||| |||||||    
T  41219945 tccatagttttaaaactcggaccggatcggccggttgaaccggttcgaccgtgaacc 41220001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 25511522 - 25511479
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtcc 294  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  25511522 catagttttaaaactcggaccggaccggccggtcggaccggtcc 25511479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 10005086 - 10005162
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtcca 328  Q
    |||||||||||||||| || || ||||| |||||||||| |||||||  ||||| ||| ||| |||||||||||||||    
T  10005086 catagttttaaaactcagaacgaaccggtcggtcgaaccagtccgaccatgaactaga-ggtaagccggttcggtcca 10005162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 41867777 - 41867736
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggt 292  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  41867777 catagttttaaaacccggaccggactggccggtcgaaccggt 41867736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 44352884 - 44352851
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggt 283  Q
    ||||||||||||||||||||||||||||||||||    
T  44352884 ccatagttttaaaactcggaccggaccggccggt 44352851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 12819460 - 12819504
Alignment:
Q  371 aaactcggccagaaccggattaaaccggtgactcgttggtctgct 415  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||    
T  12819460 aaactcagccagaaccggattaaaccggcgactcggtggtctgct 12819504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 5e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 492 - 761
Target Start/End: Original strand, 39050167 - 39050441
Alignment:
Q  492 taaatatgcaatgcactaaccactacaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaa 591  Q
    ||||| || |||||| ||||||| ||| ||| | || ||||||||||| | |||| || ||| ||||||||||||||||||||| ||||  |||| | ||    
T  39050167 taaatgtggaatgcattaaccaccacatcattccttcaattgtgttactgttttgattcttatttattatattaaattcaattgaaaaatgtcacaataa 39050266  T
Q  592 ttcacatttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaa 691  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  39050267 ttcatatttcttttttataaaacattgaaattcacaattatttttaatgatatatttcataattttgttactgttttgcttcttatttttaatgtttcaa 39050366  T
Q  692 tgatatttttcataattttagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    ||||||||||| |||||||||||||||||||||| |||||     |||||| |||||||||||||||||||||||    
T  39050367 tgatatttttcttaattttagcttaatgatatattgcaatttatatttaaacttatatacaattatttttaacac 39050441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 251 - 405
Target Start/End: Complemental strand, 33897627 - 33897472
Alignment:
Q  251 catagttttaaaactcggaccggaccgg-ccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgtta 349  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||| |    
T  33897627 catagttttaaaactcagaccggaccggaccggtcgaaccggtccgaccgtgaaccagatggttagccggtccggtccacttattggatcggatatgtca 33897528  T
Q  350 ttgaaccactatgaactggtcaaactcggccagaaccggattaaaccggtgactcg 405  Q
    |||||||  | ||||| |||||||||||||||||||||||||||||||| ||||||    
T  33897527 ttgaaccgttgtgaaccggtcaaactcggccagaaccggattaaaccggcgactcg 33897472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 32623011 - 32623155
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgttat 350  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||   ||||| |  | | || |||||||||| ||| ||||||||||| |||||||    
T  32623011 catagttttaaaactcggatcggaccggccggtcgaaccggtccgaccaggaaccggtggataagtcggttcggtcaacttattggatcggtcatgttat 32623110  T
Q  351 tgaaccactatgaactggtcaaactcggccagaaccggattaaac 395  Q
    ||| || |||||||| |||  |||||| ||| ||||||| |||||    
T  32623111 tgatccgctatgaaccggtgtaactcgaccaaaaccggaataaac 32623155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 8760208 - 8760299
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  8760208 catagttttgaaaaccggaccggatcggccggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 8760299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 813945 - 814038
Alignment:
Q  255 gttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgttattga 353  Q
    |||||||||||||||| ||||||||||||||||||||| | || |||||||||     | | |||| |||| |||| ||||||||||||||| ||||||    
T  813945 gttttaaaactcggactggaccggccggtcgaaccggttcaaccgtgaaccag-----tgggcggtccggttcacttattggatcggttatgctattga 814038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 6460623 - 6460561
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggt 312  Q
    |||||||||| |||| || || |||||||||||||||||| ||||||||||||||| ||||||    
T  6460623 ccatagttttgaaacacgaacaggaccggccggtcgaaccagtccgactgtgaaccggatggt 6460561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 679 - 715
Target Start/End: Complemental strand, 33583172 - 33583136
Alignment:
Q  679 tttaatgtttcaatgatatttttcataattttagctt 715  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33583172 tttaatgtttcaattatatttttcataattttagctt 33583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 22638849 - 22638803
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| ||| ||||| ||||||||||||| |||||||||||||    
T  22638849 catagttttgaaaatcggatcggaccggccggttgaaccggtccgac 22638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 36745546 - 36745580
Alignment:
Q  269 accggaccggccggtcgaaccggtccgactgtgaa 303  Q
    ||||||||||||||||||||||||||||| |||||    
T  36745546 accggaccggccggtcgaaccggtccgaccgtgaa 36745580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 492 - 761
Target Start/End: Original strand, 35303420 - 35303694
Alignment:
Q  492 taaatatgcaatgcactaaccactacaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaa 591  Q
    |||||||| |||||| ||||||| ||||||||| || |||| ||||||   | || || ||| ||||||||||||||||||||| ||||   ||| | ||    
T  35303420 taaatatggaatgcattaaccaccacaccatgccttcaattttgttactattatgattcttatttattatattaaattcaattgcaaaatggcacaataa 35303519  T
Q  592 ttcacatttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaa 691  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  35303520 ttcatatttcttttttataaaacattgaaattcacaattatttttaatgatatatttcataattttgttactgttttgcttcttatttttaatgtttcaa 35303619  T
Q  692 tgatatttttcataattttagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    ||||||||||| |||||||||||||||||||||| |||||     |||||| |||||||||||||||||||||||    
T  35303620 tgatatttttcttaattttagcttaatgatatattgcaatttatatttaaacttatatacaattatttttaacac 35303694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 555 - 803
Target Start/End: Original strand, 30962483 - 30962734
Alignment:
Q  555 ttattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataat 654  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||| | ||||||||||||||| |||||| ||| || ||||||||||||||    
T  30962483 ttattatattaaattcaattgtaaaaaatcactagaattcacatttcttttttataaaacattgaaattcacaattatattttattatatatttcataat 30962582  T
Q  655 tgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagcttaatgatatatcgcaatt-----ttaaagttatatacaat 749  Q
    |||| || ||| || ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||     ||||| |||||||||||    
T  30962583 tgtgctactgtcttacttcttatttttaatgtttaaatgacatttttcataattttatcttaatgatatattgcaatttatacttaaaattatatacaat 30962682  T
Q  750 tatttttaacacnnnnnnnnntacacttgtttgtagatattgttgtgattaata 803  Q
    ||||||||||||         |||||||| ||||| ||||||||||||||||||    
T  30962683 tatttttaacac--aaaaatatacacttgcttgtaaatattgttgtgattaata 30962734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 29523122 - 29523196
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggt 325  Q
    ||||||||| |||  |||||||||||||| ||||||||||||||||| ||||||| ||||| || ||||||||||    
T  29523122 catagttttgaaaaccggaccggaccggctggtcgaaccggtccgaccgtgaaccggatgggtaaccggttcggt 29523196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 30962169 - 30962295
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgtta 349  Q
    |||||| |||||||||| ||||| ||||||| || |||  |||||||| ||||||| |  |||||| || |||||| | || ||||| ||| ||||||||    
T  30962169 ccatagatttaaaactcagaccgaaccggccagttgaa--ggtccgaccgtgaaccggtgggttagtcgattcggttcgcttattgggtcgattatgtta 30962266  T
Q  350 ttgaaccactatgaactggtcaaactcgg 378  Q
    ||||||| |||||||  ||||||||||||    
T  30962267 ttgaacctctatgaatcggtcaaactcgg 30962295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 18541561 - 18541487
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggt 325  Q
    ||||||||| |||  |||||||||||||||||||||||| ||||||| ||||||| || || || ||||||||||    
T  18541561 catagttttgaaaaccggaccggaccggccggtcgaaccagtccgaccgtgaaccggaggggtaaccggttcggt 18541487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 19262286 - 19262330
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccg 295  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  19262286 catagttttaaaaatcggaccggaccggccggtcgagccggtccg 19262330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 39061161 - 39061235
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggt 325  Q
    ||||||||| |||  ||||| ||||||||||||||||| |||||||| ||||||| || || || ||||||||||    
T  39061161 catagttttgaaaaccggactggaccggccggtcgaactggtccgaccgtgaaccggaggggtaaccggttcggt 39061235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 7502230 - 7502182
Alignment:
Q  249 tccatagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||||||    
T  7502230 tccatagttttgaaacccggaccggaccggccggttcaaccggtccgac 7502182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 3989807 - 3989764
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtc 293  Q
    ||||||||||||||  |||||||||||||||||||| |||||||    
T  3989807 ccatagttttaaaaaccggaccggaccggccggtcggaccggtc 3989764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 7154429 - 7154338
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  |||||  || |||||||||||||||||||||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  7154429 catagttttgaaaaccggactagatcggccggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 7154338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 31901863 - 31901772
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  ||||||||| |||||||||| ||||||||||| ||||||| || || ||  |||||||||  ||  |||||||||||    
T  31901863 catagttttgaaaaccggaccggatcggccggtcggaccggtccgaccgtgaaccggagggataatcggttcggttgacatattggatcggt 31901772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 23292315 - 23292349
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtc 284  Q
    |||||||||||||||||||||| ||||||||||||    
T  23292315 ccatagttttaaaactcggacctgaccggccggtc 23292349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 37314227 - 37314273
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||    
T  37314227 catagttttgaaaaccggaccggaccggccggttgaaccggtccgac 37314273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 12341239 - 12341198
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggt 292  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  12341239 catagttttaaaacccggctcggaccggccggtcgaaccggt 12341198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 8e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 492 - 761
Target Start/End: Original strand, 18655984 - 18656258
Alignment:
Q  492 taaatatgcaatgcactaaccactacaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaa 591  Q
    |||||||| |||||| ||||||| ||||||  | || |||||||||   | | || || ||| ||||||||||||||||||||| ||||  |||| | ||    
T  18655984 taaatatggaatgcattaaccaccacaccaatccttcaattgtgttgttgttatgattcttatttattatattaaattcaattgcaaaatgtcacaataa 18656083  T
Q  592 ttcacatttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaa 691  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18656084 ttcatatttcttttttataaaacattgaaattcacaattatttttaatgatatatttcataattttgttactgttttgcttcttatttttaatgtttcaa 18656183  T
Q  692 tgatatttttcataattttagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    ||||||||||| |||||||||||||||||||||| |||||     |||||| ||||||| |||||||||||||||    
T  18656184 tgatatttttcttaattttagcttaatgatatattgcaatttatatttaaacttatatataattatttttaacac 18656258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 510 - 761
Target Start/End: Original strand, 4454739 - 4454995
Alignment:
Q  510 accactacaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgt 609  Q
    ||||| ||||||||| || |||||||| ||   | || || ||| ||||||||||||||||||||| ||||  |||| | | |||| ||||||||||| |    
T  4454739 accaccacaccatgccttcaattgtgtaacttttatgattcttatttattatattaaattcaattgcaaaatgtcacaatagttcatatttcttttttat 4454838  T
Q  610 gaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattt 709  Q
     |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4454839 aaaacattgaaattcaatattatttttaatgatatatttcataattttgttattgttttgcttcttatttttaatgtttcaatgatatttttcttaattt 4454938  T
Q  710 tagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    |||||||||||||||| |||||     ||| || |||||||||||||||||||||||    
T  4454939 tagcttaatgatatattgcaatttatatttgaatttatatacaattatttttaacac 4454995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 4454507 - 4454584
Alignment:
Q  311 gttagccggttcggtccactaattggatcggttatgttattgaaccactatgaactggtcaaactcggccagaaccgg 388  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  4454507 gttagccggtccggtccacttattgaatcggatatgttattgaaccgttgtgaaccggtcaaactcggccagaaccgg 4454584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 40484689 - 40484743
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  40484689 catagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaacc 40484743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 14910972 - 14910919
Alignment:
Q  252 atagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||| |||  |||| ||||||||||||||||||||||||||| |||||||    
T  14910972 atagttttgaaaaccggatcggaccggccggtcgaaccggtccgaccgtgaacc 14910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 9457457 - 9457413
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccg 295  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  9457457 catagttttaaaaatcggatcggaccgggcggtcgaaccggtccg 9457413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 42064239 - 42064207
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggt 283  Q
    |||||||||||||||||||||||||||||||||    
T  42064239 catagttttaaaactcggaccggaccggccggt 42064207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 3656627 - 3656573
Alignment:
Q  251 catagtttt-aaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||    
T  3656627 catagttttgaaaact-ggaccggaccggccggttgaaccggtccgaccgtgaacc 3656573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 13486455 - 13486501
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||    
T  13486455 catagttttgaaaagcggaccggaccggccggttgaaccggtccgac 13486501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 14269950 - 14269916
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcg 285  Q
    |||||||||||||||||||||||||||||| ||||    
T  14269950 catagttttaaaactcggaccggaccggccagtcg 14269916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 27678559 - 27678605
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| |||  |||||||||||||||||| |||||||||||||    
T  27678559 catagttttgaaaaccggaccggaccggccggttgaaccggtccgac 27678605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 27844955 - 27844989
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtc 284  Q
    ||||||||||||||| |||||||||||||||||||    
T  27844955 ccatagttttaaaacccggaccggaccggccggtc 27844989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 8e-70; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 492 - 761
Target Start/End: Original strand, 24096255 - 24096529
Alignment:
Q  492 taaatatgcaatgcactaaccactacaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaa 591  Q
    ||||| || |||||| ||||||| ||| ||||| || ||||||| ||| | |||  || ||| ||||||||||||||||||||| ||||  |||| | ||    
T  24096255 taaatgtggaatgcattaaccaccacatcatgccttcaattgtgatactgttttaattcttatttattatattaaattcaattgcaaaatgtcacaataa 24096354  T
Q  592 ttcacatttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaa 691  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||     
T  24096355 ttcatatttcttttttataaaacattgaaattcacaattatttttaatgatatatttcataattttgttactgtttttcttcttatttttaatgtttcat 24096454  T
Q  692 tgatatttttcataattttagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    ||||||||||| |||||||||||||||||||||| |||||     |||||| |||||||||||||||||||||||    
T  24096455 tgatatttttcttaattttagcttaatgatatattgcaatttatatttaaacttatatacaattatttttaacac 24096529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 24096011 - 24096117
Alignment:
Q  299 gtgaaccagatggttagccggttcggtccactaattggatcggttatgttattgaaccactatgaactggtcaaactcggccagaaccggattaaaccgg 398  Q
    ||||||| |||||||||||||| || |||||| |||||||| | ||||| ||||||||  | ||||| ||||||||||| ||||||||||||||||||||    
T  24096011 gtgaaccggatggttagccggtccgatccacttattggatcagatatgtcattgaaccgttgtgaaccggtcaaactcgaccagaaccggattaaaccgg 24096110  T
Q  399 tgactcg 405  Q
    |||||||    
T  24096111 tgactcg 24096117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 36098823 - 36098878
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  36098823 ccatagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaacc 36098878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 11733479 - 11733553
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggt 325  Q
    ||||||||| |||  ||||||||||||| |||||||||||||||||| ||||||| || || || ||||||||||    
T  11733479 catagttttgaaaaccggaccggaccggtcggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggt 11733553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 36859113 - 36859040
Alignment:
Q  269 accggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||||||||||||||||||||||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  36859113 accggaccggccggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 36859040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 29984239 - 29984148
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  |||||||||||||||||| ||| ||||||||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  29984239 catagttttgaaaaccggaccggaccggccggttgaatcggtccgaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 29984148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 1583261 - 1583219
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtc 293  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  1583261 catagttttaaaaatcggaccggaccggccggttgaaccggtc 1583219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 20130580 - 20130637
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccag 307  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||| ||| | |||||||    
T  20130580 ccatagttttaaaaatcggatcggaccggccggttgaaccggtcagaccgggaaccag 20130637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 34258499 - 34258552
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaac 304  Q
    ||||||||| |||| |||| |||||||| |||||||||||||||||| ||||||    
T  34258499 catagttttgaaacccggatcggaccggtcggtcgaaccggtccgaccgtgaac 34258552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 16197972 - 16198026
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    ||||||||| |||| ||||| |||||||||||| | ||||||||||| |||||||    
T  16197972 catagttttgaaacccggactggaccggccggttggaccggtccgaccgtgaacc 16198026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 34190958 - 34191004
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    |||||||||||||  | ||||||||||||||||||||||| ||||||    
T  34190958 catagttttaaaaaccagaccggaccggccggtcgaaccgatccgac 34191004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 10991934 - 10991975
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccgg 291  Q
    |||||||||| |||| ||||||||||||| ||||||||||||    
T  10991934 ccatagttttgaaacccggaccggaccggtcggtcgaaccgg 10991975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 44605040 - 44605097
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccag 307  Q
    |||||||||||||||||||  ||||||||||||||  ||||||  ||| |||||||||    
T  44605040 ccatagttttaaaactcggctcggaccggccggtccgaccggttggacagtgaaccag 44605097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 47424703 - 47424630
Alignment:
Q  269 accggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    |||||||||||||||||||||||||||||  |||| | || || || ||||||||||  ||  |||||||||||    
T  47424703 accggaccggccggtcgaaccggtccgaccatgaatcggaggggtaaccggttcggttgacatattggatcggt 47424630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 2e-67; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 516 - 761
Target Start/End: Original strand, 4224458 - 4224708
Alignment:
Q  516 acaccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaagctcactaaaattcacatttcttttttgtgaaaca 615  Q
    ||||||||| || |||||| |||  | |||| || ||| ||||||||||||||||||||| ||||  |||| | |||||| ||||||||||| | |||||    
T  4224458 acaccatgccttcaattgtattagtgttttgattcttatttattatattaaattcaattgcaaaatgtcacaataattcatatttcttttttataaaaca 4224557  T
Q  616 ttgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgatatttttcataattttagctt 715  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4224558 ttgaaattcacaattatttttaatgatatatttaataattttgttacagttttgcttcttatttttaatgtttcaatgatatttttcttaattttagctt 4224657  T
Q  716 aatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    |||||||||| |||||     |||||| |||||||||||||||||||||||    
T  4224658 aatgatatattgcaatttatatttaaacttatatacaattatttttaacac 4224708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 813915 - 814016
Alignment:
Q  112 attagggattatgttctattttttcatcgcattaatcaacttttaattaatttaattcatgcaagatttgattaattgattcttctttctacaataataa 211  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||| |  |||| |||||| ||||||||||||||||| ||||    
T  813915 attagggtttatgttctgttttttcatcgcattaatcaaattttaattaatttgattaatgcgaattttgtttaattcattcttctttctacaatgataa 814014  T
Q  212 tt 213  Q
    ||    
T  814015 tt 814016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 28235772 - 28235715
Alignment:
Q  246 acatccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaa 303  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  28235772 acatgcatagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaa 28235715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 31985152 - 31985195
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtcc 294  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  31985152 catagttttaaaactcggaccggaccggccggtcggaccggtcc 31985195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 32365031 - 32364977
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||| |||||||    
T  32365031 catagttttaaaaaccggctcggaccggccggtcgaaccggtccgaccgtgaacc 32364977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 46546156 - 46546114
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggt 292  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  46546156 ccatagttttaaaactcggaccggaccgaccggttgaaccggt 46546114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 42867054 - 42867022
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggt 283  Q
    |||||||||||||||||||||||||||||||||    
T  42867054 catagttttaaaactcggaccggaccggccggt 42867022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 43060770 - 43060842
Alignment:
Q  332 attggatcggttatgttattgaaccactatgaactggtcaaactcggccagaaccggattaaaccggtgactc 404  Q
    ||||||||| ||||||||||||  | ||| |||  |||  |||||||||||||||||| ||||||||||||||    
T  43060770 attggatcgattatgttattgactcgctacgaaacggtgcaactcggccagaaccggaataaaccggtgactc 43060842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 12793662 - 12793608
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaac 304  Q
    |||||||||| |||  ||||||||||||| | |||||||||||||||| ||||||    
T  12793662 ccatagttttgaaaaccggaccggaccggtcagtcgaaccggtccgaccgtgaac 12793608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 44258587 - 44258541
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| ||| ||||||||||||| ||||| |||||||||||||    
T  44258587 catagttttgaaaatcggaccggaccgtccggttgaaccggtccgac 44258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 18033568 - 18033535
Alignment:
Q  270 ccggaccggccggtcgaaccggtccgactgtgaa 303  Q
    |||||||||||||||||||||||||||| |||||    
T  18033568 ccggaccggccggtcgaaccggtccgaccgtgaa 18033535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 20726879 - 20726846
Alignment:
Q  272 ggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||||||||||||||| |||||||    
T  20726879 ggaccggccggtcgaaccggtccgaccgtgaacc 20726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 114; Significance: 3e-57; HSPs: 3)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 597 - 761
Target Start/End: Original strand, 55334 - 55503
Alignment:
Q  597 atttcttttttgtgaaacattgaaattcataattatttttaatgatatatttcataattgtgttattgttttgcttcttatttttaatgtttcaatgata 696  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  55334 atttcttttttataaaacattgaaattcacaattatttttaatgatatatttcataattttgttactgttttgcttcttatttttaatatttcaatgata 55433  T
Q  697 tttttcataattttagcttaatgatatatcgcaat-----tttaaagttatatacaattatttttaacac 761  Q
    |||||| |||||||||||||||||||||| |||||     |||||| |||||||||||||||||||||||    
T  55434 tttttcttaattttagcttaatgatatattgcaatttatatttaaacttatatacaattatttttaacac 55503  T

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Target: scaffold0074; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 54920 - 55074
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggttatgttat 350  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||    
T  54920 catagttttaaaactcgaactggaccggccggtcgaactggtccgaccgtgaaccggatggttagccggtccggtccacttattggatcggatatgtcat 55019  T
Q  351 tgaaccactatgaactggtcaaactcggccagaaccggattaaaccggtgactcg 405  Q
    ||||||  | |||||  |||||||||||||||||| || ||||||| | ||||||    
T  55020 tgaaccgttgtgaaccagtcaaactcggccagaactggcttaaaccagcgactcg 55074  T

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Target: scaffold0074; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 55234 - 55297
Alignment:
Q  517 caccatgcattgaattgtgttaccgatttgcttattaattattatattaaattcaattgtaaaa 580  Q
    ||||||||||| ||||||||||| | | || || ||| ||||||||||||||||||||| ||||    
T  55234 caccatgcattcaattgtgttactgttatgattcttatttattatattaaattcaattgcaaaa 55297  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 22350471 - 22350562
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcggtccactaattggatcggt 342  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||| || || || ||||||||||  ||  |||||||||||    
T  22350471 catagttttgaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaaccggaggggtaaccggttcggttgacatattggatcggt 22350562  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 9407495 - 9407444
Alignment:
Q  679 tttaatgtttcaatgatatttttcataattttagcttaatgatatatcgcaa 730  Q
    |||||||||||||| || |||||||||||||||| |||||||||||| ||||    
T  9407495 tttaatgtttcaattatctttttcataattttagtttaatgatatattgcaa 9407444  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 29291646 - 29291685
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccg 290  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  29291646 catagttttaaaactcggaccggaccggccggttgaaccg 29291685  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 24067317 - 24067357
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccg 290  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  24067317 ccatagttttgaaaatcggaccggaccggccggtcgaaccg 24067357  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 24431573 - 24431498
Alignment:
Q  248 atccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaaccagatggttagccggttcg 323  Q
    |||||||||||| ||||||||  ||||||||||||||  ||| ||| ||| |||||||||  ||| ||||||||||    
T  24431573 atccatagttttgaaactcggcacggaccggccggtcagaccagtcggaccgtgaaccagtgggtaagccggttcg 24431498  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 21528099 - 21528145
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgac 297  Q
    ||||||||| |||| ||||||||||||||||||  ||||||||||||    
T  21528099 catagttttgaaacccggaccggaccggccggttcaaccggtccgac 21528145  T

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Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 7196 - 7251
Alignment:
Q  250 ccatagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||| ||| |||||||    
T  7196 ccatagttttaaaactcggaccggaccgtccggttgaacccgtcggaccgtgaacc 7251  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 52767 - 52713
Alignment:
Q  251 catagttttaaaactcggaccggaccggccggtcgaaccggtccgactgtgaacc 305  Q
    |||||||||||||  |||| ||||||| ||||| ||||||||||||| |||||||    
T  52767 catagttttaaaaaccggatcggaccgaccggttgaaccggtccgaccgtgaacc 52713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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